Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SMUNUM_RS05085 Genome accession   NZ_AP014571
Coordinates   1026508..1028253 (-) Length   581 a.a.
NCBI ID   WP_168747786.1    Uniprot ID   -
Organism   Streptococcus mutans LP13     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1021508..1033253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS05065 (SMNUM_0953) - 1022702..1023388 (+) 687 WP_002297080.1 phosphopantothenate--cysteine ligase -
  SMUNUM_RS05070 (SMNUM_0954) coaC 1023381..1023920 (+) 540 WP_002262265.1 phosphopantothenoylcysteine decarboxylase -
  SMUNUM_RS05075 (SMNUM_0955) - 1023995..1024567 (+) 573 WP_168747790.1 ECF transporter S component -
  SMUNUM_RS05080 (SMNUM_0956) - 1024662..1026377 (+) 1716 WP_168747788.1 phospho-sugar mutase -
  SMUNUM_RS05085 (SMNUM_0957) rcrQ 1026508..1028253 (-) 1746 WP_168747786.1 ABC transporter ATP-binding protein Regulator
  SMUNUM_RS05090 (SMNUM_0958) - 1028250..1029983 (-) 1734 WP_019803355.1 ABC transporter ATP-binding protein -
  SMUNUM_RS05095 (SMNUM_0959) - 1029993..1030592 (-) 600 WP_080047968.1 lysozyme family protein -
  SMUNUM_RS05100 (SMNUM_0960) - 1030608..1031585 (-) 978 WP_002264268.1 nucleoid-associated protein -
  SMUNUM_RS05105 (SMNUM_0961) glyA 1031582..1032844 (-) 1263 WP_002265987.1 serine hydroxymethyltransferase -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 65285.96 Da        Isoelectric Point: 9.5038

>NTDB_id=55543 SMUNUM_RS05085 WP_168747786.1 1026508..1028253(-) (rcrQ) [Streptococcus mutans LP13]
MKARNNKNTLKRLNADFLKQRILVFLALLGTLIQVSLTVYLPVLIGRAVDAVLAKNVQKILPTILISMILVVAFNTIIQW
INPLIYNRLVFTYSQKLRQNIIEKLYRLPLSYLDKHSSGDLVSRITTDVEQLSNGLLMVFNQFFVGILTILLTIITMAKL
DFFMMVLVLALTPLSLFVARFIAQKSYHLYQRQTRARGAFTQHIEESLRQESLIQSFNAQDQFIHTFDHLNSKYAKYSQG
AIFYSSTVNPATRFINALIYALLAGIGALRIMNGNFTVGQLTTFLNYVTQYTKPFNDISAVLSELQSALACAERLYMILD
EKDAKDDGKKELVSESVKGAITFDKISFGYDEKQTLIKNLSVNIPQGSKVAIVGPTGAGKSTLINLLMQFYDLREGQILL
DGQAITDYSKASYRQQIGMVLQETWLKTATVLENIAFGYPEASREQVIAAAKAANADFFIKQLPQGYDTFLADAGESLSQ
GQRQLLTIARIFVHIPKILILDEATSSIDTRTEILVQEAFEKLMKGRTSFIIAHRLSTIQSADLILVMVDGNIVEQGNHK
DLMQKKGVYYQMQTAQDSLES

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=55543 SMUNUM_RS05085 WP_168747786.1 1026508..1028253(-) (rcrQ) [Streptococcus mutans LP13]
ATGAAAGCTAGAAATAATAAAAATACCTTAAAGCGCTTGAATGCTGACTTTCTTAAGCAGAGAATTTTGGTTTTTCTTGC
CTTATTGGGTACTTTGATTCAGGTCAGCCTAACGGTTTATCTCCCAGTTCTAATTGGGCGAGCAGTTGATGCTGTTCTTG
CTAAAAATGTCCAGAAAATCTTACCGACAATCTTGATTAGCATGATTCTTGTTGTTGCCTTTAATACCATTATCCAATGG
ATCAATCCCTTGATTTACAATCGTTTGGTTTTCACTTATAGCCAGAAGCTTCGGCAGAATATCATTGAAAAACTTTATCG
CCTCCCTTTATCTTATTTGGATAAGCATTCTTCAGGTGATTTAGTCAGTCGTATAACAACGGATGTTGAACAATTATCCA
ACGGACTTTTAATGGTTTTTAATCAGTTTTTCGTAGGTATTTTAACTATTTTGTTAACCATCATAACAATGGCGAAGTTA
GACTTTTTTATGATGGTTTTGGTACTGGCCTTAACACCACTTTCCTTATTTGTTGCTCGTTTTATTGCTCAAAAGAGTTA
TCATCTTTATCAAAGACAAACCAGAGCCAGAGGGGCGTTTACTCAACATATTGAAGAGAGTCTTCGTCAGGAAAGTTTGA
TTCAAAGTTTCAATGCTCAAGATCAATTTATTCACACTTTTGATCATCTAAATAGCAAATATGCTAAGTATTCACAAGGG
GCTATTTTCTATTCATCCACAGTCAACCCTGCGACTCGTTTTATCAATGCCTTAATTTATGCGCTCTTAGCTGGTATCGG
AGCATTACGCATTATGAATGGGAATTTTACTGTGGGGCAATTGACCACTTTCTTGAATTATGTCACTCAATATACCAAAC
CCTTTAATGACATTTCAGCCGTTCTATCTGAATTACAAAGTGCTTTAGCATGTGCAGAACGTCTCTATATGATTCTTGAT
GAAAAGGATGCCAAAGATGATGGCAAGAAAGAATTAGTCAGTGAATCTGTTAAAGGTGCTATTACCTTTGATAAGATTAG
TTTTGGTTATGATGAGAAACAAACTCTGATTAAGAATTTGTCTGTCAATATTCCACAAGGTTCCAAGGTGGCTATCGTTG
GTCCTACAGGGGCTGGAAAATCAACTCTCATTAATTTGCTGATGCAATTTTATGATTTGCGAGAAGGGCAAATACTGCTA
GATGGGCAAGCAATCACTGATTATAGTAAAGCTTCTTATCGTCAGCAGATTGGTATGGTCTTACAAGAAACTTGGCTGAA
AACGGCTACTGTTTTGGAAAATATTGCCTTTGGTTATCCTGAAGCTAGCCGCGAGCAAGTGATTGCAGCGGCAAAAGCAG
CTAATGCCGACTTTTTTATAAAACAACTTCCTCAAGGTTACGATACTTTTTTGGCCGATGCAGGAGAATCCCTATCACAA
GGGCAAAGGCAATTGTTAACGATAGCACGAATTTTTGTTCATATTCCTAAAATATTAATCTTGGATGAAGCAACTTCCTC
CATTGATACACGAACAGAAATCTTGGTCCAAGAAGCATTTGAAAAGCTTATGAAAGGACGGACCAGCTTTATTATTGCAC
ATAGATTGTCAACTATTCAAAGCGCAGACCTTATCTTAGTTATGGTAGATGGCAATATTGTTGAACAAGGAAATCATAAA
GACTTGATGCAGAAAAAAGGTGTCTATTATCAAATGCAGACAGCACAGGATAGCCTTGAAAGCTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(24-294)

ABC transporter (ABC_tran)

(358-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.567

100

0.389

Multiple sequence alignment