Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   J8Y16_RS18465 Genome accession   NZ_CP072766
Coordinates   3603545..3604324 (-) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus cereus strain BC06     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3598545..3609324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8Y16_RS18440 (J8Y16_18440) uppS 3599290..3600066 (-) 777 WP_000971301.1 isoprenyl transferase -
  J8Y16_RS18445 (J8Y16_18445) frr 3600152..3600709 (-) 558 WP_000531503.1 ribosome recycling factor -
  J8Y16_RS18450 (J8Y16_18450) pyrH 3600712..3601434 (-) 723 WP_000042663.1 UMP kinase -
  J8Y16_RS18455 (J8Y16_18455) tsf 3601501..3602388 (-) 888 WP_001018581.1 translation elongation factor Ts -
  J8Y16_RS18460 (J8Y16_18460) rpsB 3602492..3603193 (-) 702 WP_000111483.1 30S ribosomal protein S2 -
  J8Y16_RS18465 (J8Y16_18465) codY 3603545..3604324 (-) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  J8Y16_RS18470 (J8Y16_18470) hslU 3604402..3605793 (-) 1392 WP_000550088.1 ATP-dependent protease ATPase subunit HslU -
  J8Y16_RS18475 (J8Y16_18475) hslV 3605816..3606358 (-) 543 WP_000526271.1 ATP-dependent protease proteolytic subunit HslV -
  J8Y16_RS18480 (J8Y16_18480) xerC 3606401..3607300 (-) 900 WP_071736923.1 tyrosine recombinase XerC -
  J8Y16_RS18485 (J8Y16_18485) trmFO 3607366..3608670 (-) 1305 WP_001991958.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=555411 J8Y16_RS18465 WP_000421288.1 3603545..3604324(-) (codY) [Bacillus cereus strain BC06]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=555411 J8Y16_RS18465 WP_000421288.1 3603545..3604324(-) (codY) [Bacillus cereus strain BC06]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81WK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459