Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VPBB_RS23395 Genome accession   NC_019955
Coordinates   156378..157103 (-) Length   241 a.a.
NCBI ID   WP_015296082.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus BB22OP     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 151378..162103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPBB_RS00700 (VPBB_0132) - 152499..152990 (+) 492 WP_005458943.1 type II secretion system protein M -
  VPBB_RS00705 (VPBB_0133) - 152992..153753 (+) 762 WP_015296081.1 type II secretion system protein N -
  VPBB_RS00710 (VPBB_0134) cysQ 154037..154864 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VPBB_RS00715 (VPBB_0135) nudE 154906..155475 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  VPBB_RS00720 (VPBB_0136) nfuA 155696..156280 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  VPBB_RS23395 (VPBB_0137) comF 156378..157103 (-) 726 WP_015296082.1 phosphoribosyltransferase family protein Machinery gene
  VPBB_RS00725 (VPBB_0138) bioH 157188..157955 (+) 768 WP_029826009.1 pimeloyl-ACP methyl ester esterase BioH -
  VPBB_RS00730 (VPBB_0139) - 158079..158543 (+) 465 WP_015296084.1 hypothetical protein -
  VPBB_RS00735 (VPBB_0140) - 158679..161000 (-) 2322 WP_015296085.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27618.71 Da        Isoelectric Point: 8.7043

>NTDB_id=55514 VPBB_RS23395 WP_015296082.1 156378..157103(-) (comF) [Vibrio parahaemolyticus BB22OP]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKVEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVHALTQLLAQSISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=55514 VPBB_RS23395 WP_015296082.1 156378..157103(-) (comF) [Vibrio parahaemolyticus BB22OP]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCTCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGTAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGACTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCACGCTTTAACGCAATTGCTTGCCCAGAGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTATTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGCCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATAGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.784

100

0.718
  comF Vibrio cholerae strain A1552

48.319

98.755

0.477

Multiple sequence alignment