Detailed information    

insolico Bioinformatically predicted

Overview


Name   comFC/cflB   Type   Machinery gene
Locus tag   SMUNUM_RS02470 Genome accession   NZ_AP014571
Coordinates   478764..479429 (+) Length   221 a.a.
NCBI ID   WP_002270131.1    Uniprot ID   -
Organism   Streptococcus mutans LP13     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 473764..484429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS02450 (SMNUM_0438) - 474322..475413 (+) 1092 WP_002296940.1 glycerol dehydrogenase -
  SMUNUM_RS02455 (SMNUM_0439) cysK 475747..476673 (-) 927 WP_226783774.1 cysteine synthase A -
  SMUNUM_RS02460 (SMNUM_0440) - 476764..477393 (-) 630 WP_002263027.1 YigZ family protein -
  SMUNUM_RS02465 (SMNUM_0441) comFA/cflA 477466..478767 (+) 1302 WP_002277412.1 DEAD/DEAH box helicase Machinery gene
  SMUNUM_RS02470 (SMNUM_0442) comFC/cflB 478764..479429 (+) 666 WP_002270131.1 ComF family protein Machinery gene
  SMUNUM_RS02475 (SMNUM_0443) raiA 479508..480056 (+) 549 WP_002263024.1 ribosome-associated translation inhibitor RaiA -
  SMUNUM_RS02480 (SMNUM_0444) - 480180..481274 (+) 1095 WP_002266342.1 hypothetical protein -
  SMUNUM_RS02485 (SMNUM_0445) - 481294..482994 (+) 1701 WP_168747575.1 hypothetical protein -
  SMUNUM_RS02490 (SMNUM_0446) - 483074..483709 (-) 636 WP_019805346.1 hypothetical protein -

Sequence


Protein


Download         Length: 221 a.a.        Molecular weight: 26031.08 Da        Isoelectric Point: 8.9825

>NTDB_id=55514 SMUNUM_RS02470 WP_002270131.1 478764..479429(+) (comFC/cflB) [Streptococcus mutans LP13]
MNCLICHLPFESKYYFYSIFFLKTSRDFVCPPCFAKFQFISEKHCLNCYKEGEGDICQDCHKWQNLKKEVHHKALFCYNQ
AMKDYFSAYKFQGDYLLRKVFIKPIKEALREYTNYTLVPIPLSSSSLENRGFNQVQAFLDEAKLSYHDLLGKEDGSVKQS
SKTRQERLKTQQNFYLRKHKELPDKVMLVDDIYTTGMTIQLASQLLRENGVKTIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=55514 SMUNUM_RS02470 WP_002270131.1 478764..479429(+) (comFC/cflB) [Streptococcus mutans LP13]
ATGAACTGTCTCATTTGTCACTTGCCTTTTGAGAGTAAATATTATTTTTATTCTATTTTCTTCTTGAAAACTTCAAGAGA
TTTTGTTTGCCCACCTTGCTTTGCGAAATTTCAATTCATATCTGAAAAACATTGCCTAAATTGTTATAAGGAGGGAGAAG
GAGATATCTGTCAAGATTGCCACAAATGGCAAAATCTCAAAAAGGAGGTTCATCACAAAGCTCTCTTTTGTTACAATCAA
GCTATGAAAGATTATTTCAGTGCTTACAAATTTCAAGGGGATTATCTTTTAAGAAAGGTCTTTATAAAGCCTATTAAAGA
AGCCTTAAGAGAGTATACTAATTATACTTTGGTTCCCATTCCACTCAGCTCTTCAAGTTTAGAGAATCGTGGTTTTAATC
AAGTGCAAGCTTTTTTAGATGAGGCAAAATTGTCTTATCATGATTTATTAGGCAAAGAAGATGGTAGTGTAAAACAATCA
AGTAAAACACGTCAAGAACGCCTAAAGACTCAACAAAACTTTTATTTAAGGAAACATAAAGAATTACCTGATAAAGTGAT
GCTAGTTGATGATATCTATACAACGGGTATGACAATTCAATTGGCCAGTCAATTATTGCGTGAAAATGGTGTGAAAACAA
TAAAATCCTTTTCTTTAGCAAGGTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

44.796

100

0.448

  comFC/cflB Streptococcus mitis NCTC 12261

44.796

100

0.448

  comFC/cflB Streptococcus pneumoniae Rx1

44.344

100

0.443

  comFC/cflB Streptococcus pneumoniae D39

44.344

100

0.443

  comFC/cflB Streptococcus pneumoniae R6

44.344

100

0.443

  comFC/cflB Streptococcus mitis SK321

43.891

100

0.439


Multiple sequence alignment