Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LZG50_RS01410 Genome accession   NZ_CP090611
Coordinates   294674..295438 (-) Length   254 a.a.
NCBI ID   WP_001136232.1    Uniprot ID   Q0TBX9
Organism   Escherichia coli isolate DCE7     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 289674..300438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG50_RS01385 (LZG50_01385) yhhJ 291516..292640 (+) 1125 WP_024242098.1 ABC transporter permease -
  LZG50_RS01390 (LZG50_01390) - 292713..292988 (+) 276 WP_001260301.1 type II toxin-antitoxin system HicA family toxin -
  LZG50_RS01395 (LZG50_01395) - 292985..293344 (+) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  LZG50_RS01400 (LZG50_01400) nikR 293464..293865 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  LZG50_RS01405 (LZG50_01405) nikE 293871..294677 (-) 807 WP_000173679.1 nickel import ATP-binding protein NikE -
  LZG50_RS01410 (LZG50_01410) amiE 294674..295438 (-) 765 WP_001136232.1 nickel import ATP-binding protein NikD Regulator
  LZG50_RS01415 (LZG50_01415) nikC 295438..296271 (-) 834 WP_001008957.1 nickel ABC transporter permease subunit NikC -
  LZG50_RS01420 (LZG50_01420) nikB 296268..297212 (-) 945 WP_000947071.1 nickel ABC transporter permease subunit NikB -
  LZG50_RS01425 (LZG50_01425) nikA 297212..298786 (-) 1575 WP_000493122.1 nickel ABC transporter substrate-binding protein -
  LZG50_RS01430 (LZG50_01430) acpT 298897..299484 (-) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.40 Da        Isoelectric Point: 6.6882

>NTDB_id=555075 LZG50_RS01410 WP_001136232.1 294674..295438(-) (amiE) [Escherichia coli isolate DCE7]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=555075 LZG50_RS01410 WP_001136232.1 294674..295438(-) (amiE) [Escherichia coli isolate DCE7]
ATGCCACAACAGATTGAACTCCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGTGGCAGCGGGAAGTCGCTGACCTGCGCCGCGACGCTGGGCATTCTGC
CTGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGAAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTGCACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAGATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCGCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0TBX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398