Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   L0F67_RS08350 Genome accession   NZ_CP090556
Coordinates   1680092..1681432 (+) Length   446 a.a.
NCBI ID   WP_014991335.1    Uniprot ID   A0ABT1WRR4
Organism   Actinobacillus suis strain D20_277     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1675092..1686432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0F67_RS08325 (L0F67_08310) msrB 1675517..1675912 (-) 396 WP_014991330.1 peptide-methionine (R)-S-oxide reductase MsrB -
  L0F67_RS08330 (L0F67_08315) gap 1676135..1677138 (+) 1004 Protein_1590 type I glyceraldehyde-3-phosphate dehydrogenase -
  L0F67_RS08335 (L0F67_08320) - 1677383..1678435 (+) 1053 WP_014991332.1 rod shape-determining protein -
  L0F67_RS08340 (L0F67_08325) mreC 1678540..1679592 (+) 1053 WP_014991333.1 rod shape-determining protein MreC -
  L0F67_RS08345 (L0F67_08330) mreD 1679592..1680080 (+) 489 WP_014991334.1 rod shape-determining protein MreD -
  L0F67_RS08350 (L0F67_08335) rarA 1680092..1681432 (+) 1341 WP_014991335.1 replication-associated recombination protein A Machinery gene
  L0F67_RS08355 (L0F67_08340) znuB 1681522..1682307 (+) 786 WP_014991336.1 zinc ABC transporter permease subunit ZnuB -
  L0F67_RS08360 (L0F67_08345) - 1682504..1683303 (+) 800 Protein_1596 class II glutamine amidotransferase -
  L0F67_RS08365 (L0F67_08350) ispF 1683653..1684129 (-) 477 WP_014991338.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  L0F67_RS08370 (L0F67_08355) ispD 1684132..1684812 (-) 681 WP_039194967.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  L0F67_RS08375 (L0F67_08360) ftsB 1684822..1685100 (-) 279 WP_014991340.1 cell division protein FtsB -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50180.97 Da        Isoelectric Point: 7.0160

>NTDB_id=554891 L0F67_RS08350 WP_014991335.1 1680092..1681432(+) (rarA) [Actinobacillus suis strain D20_277]
MSSLSFDFSEDFRPLPARMRPRTLAEYIGQSHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHFDAEVERL
SAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARIYI
LKPLQAVEIHQILQNALLDKERGLGNESFVLEDDVLTLLADYVNGDGRYALNCLELMSDMAEQGIHGKILNKTLLTEVLG
ERQARFDKGGDRFYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQIAINAWDCYT
RVGAYEGERAIAQAIIYLAVAPKSNAVYNAFNEAKQLAKEAKDYDVPEHLRNAPTKLMKSLGYGAEYRYAHHEPNAYAAG
ENYFPPELKDTQFYHPTERGMEKQIKEKMLWLRAQDAASAKQRYKR

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=554891 L0F67_RS08350 WP_014991335.1 1680092..1681432(+) (rarA) [Actinobacillus suis strain D20_277]
ATGAGTAGCTTATCTTTTGATTTTTCTGAAGATTTTCGTCCTTTACCCGCCAGAATGCGTCCACGCACTCTGGCGGAATA
CATTGGGCAATCCCATCTTATCGGAGAGGGGAAACCTCTCCGCCGTGCCATTGAAGCAGGGCATTCTCACTCCATGATCT
TCTGGGGACCACCTGGCACAGGTAAAACCACATTAGCTGAAATTATTGCTCATCATTTTGATGCAGAAGTTGAACGTCTT
TCTGCGGTAACAAGCGGTGTTAAAGAAATTCGAGAAGCAATTGAACGCGCAAAATTGAACCGTCAAACCGGCAGACGCAC
TTTATTATTTGTAGATGAAGTACATCGTTTTAATAAAAGCCAGCAGGATGCGTTTTTACCGCATATTGAAGATGGGACGA
TTATTTTCATCGGTGCCACCACAGAAAACCCTTCCTTTGAATTAAATAATGCGTTGCTTTCCCGAGCTAGAATTTATATT
TTAAAACCATTACAAGCGGTCGAAATTCACCAAATTTTGCAAAATGCGCTATTAGATAAAGAACGTGGGTTAGGTAATGA
ATCTTTTGTTCTGGAAGATGATGTTTTAACGTTATTGGCTGACTATGTAAATGGTGATGGTCGTTATGCATTAAATTGTT
TAGAGCTTATGTCGGATATGGCGGAACAAGGCATTCATGGCAAAATTTTAAATAAAACGCTGCTCACAGAAGTCTTAGGT
GAACGCCAAGCTCGTTTTGATAAAGGCGGTGATCGTTTTTATGATCTGATTTCCGCATTACATAAGTCGGTGAGAGGATC
TTCGCCGGATGGTGCATTGTATTGGTATGCCAGAATTTTAACTGCGGGAGGCGATCCTTTATATGTTGCACGTAGATTAC
TGGCGATAGCTTCCGAAGATATCGGCAATGCAGATCCAAGAGCAATGCAAATTGCGATTAATGCTTGGGATTGTTATACC
CGGGTCGGTGCTTATGAAGGTGAAAGAGCGATTGCTCAAGCTATTATTTATTTGGCAGTAGCACCTAAAAGTAATGCGGT
ATATAACGCTTTTAATGAAGCGAAGCAATTAGCCAAAGAGGCGAAAGATTATGATGTACCGGAGCATTTACGCAATGCGC
CAACGAAACTAATGAAGTCTTTGGGCTATGGTGCAGAATATCGCTATGCACATCATGAACCTAACGCTTATGCTGCCGGT
GAGAATTATTTTCCTCCTGAATTGAAGGATACGCAGTTTTACCACCCGACAGAAAGAGGCATGGAAAAACAGATAAAAGA
AAAAATGTTATGGCTGAGAGCACAAGATGCGGCAAGTGCAAAGCAACGGTATAAGCGGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(186-265)

MgsA AAA+ ATPase C terminal (MgsA_C)

(266-432)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(19-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.471

95.291

0.386