Detailed information NTG0554838

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: LZ756_RS05565
• Genome accession: NZ_CP090547
• Coordinates: 1202991..1204358 (+)
• Length: 455 a.a.
• NCBI ID: WP_020850922.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. sandyi strain OC8
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1197991..1209358

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZ756_RS05555 (LZ756_05555)	-	1199746..1201656 (+)	1911	WP_020850921.1	DUF3857 domain-containing transglutaminase family protein	-
LZ756_RS05560 (LZ756_05560)	lolA	1202234..1202860 (+)	627	WP_004089126.1	outer membrane lipoprotein chaperone LolA	-
LZ756_RS05565 (LZ756_05565)	rarA	1202991..1204358 (+)	1368	WP_020850922.1	replication-associated recombination protein A	Machinery gene
LZ756_RS05570 (LZ756_05570)	crcB	1204519..1204920 (+)	402	WP_020850923.1	fluoride efflux transporter CrcB	-
LZ756_RS05575 (LZ756_05575)	-	1205594..1207090 (+)	1497	WP_020850924.1	ATP-binding protein	-
LZ756_RS05580 (LZ756_05580)	folK	1207216..1207731 (+)	516	WP_024749287.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-
LZ756_RS05585 (LZ756_05585)	-	1207742..1208479 (-)	738	WP_020850926.1	pteridine reductase	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 50826.09 Da
• Isoelectric Point: 6.8834

>NTDB_id=554838 LZ756_RS05565 WP_020850922.1 1202991..1204358(+) (rarA) [Xylella fastidiosa subsp. sandyi strain OC8]
MTRQRFPTLQHDLLGVAPLLQPLAERMRPRTLHEMVGQKRLLAPDRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAHY
IDAEFRSVSAVLSGLPEVRQILAEAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIERGSIIFVGATTENPSFELNSAL
LSRCRVHVLEAVSSQDIVVALQRALQDTERGLGGQKIEVSEAYLLEIAKAADGDVRRALTLLEIAAELAQDEDEQITADL
LSQVLADRSRRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRMLDGGCDPIYLARRLTRMAIEDIGLADPRAQSMALE
AWDIYERLGSPEGELAFAQLVLYLASTAKSNAGYVAFNVAKEDIRQTGTQDVPLRLRNAPTRLMKSLGYGIGYQYDHDAE
NGVALEQTCFPDALGERIYYQPVSRGLEIKLKEKLDQLRAARAQIQADKPQRPRA

Nucleotide

• Length: 1368 bp

>NTDB_id=554838 LZ756_RS05565 WP_020850922.1 1202991..1204358(+) (rarA) [Xylella fastidiosa subsp. sandyi strain OC8]
GTGACACGACAGCGCTTTCCGACTCTTCAGCATGATTTGCTTGGTGTGGCTCCTCTCTTGCAGCCACTGGCCGAGCGCAT
GCGTCCTCGTACTCTTCATGAGATGGTAGGACAGAAGCGCTTGCTTGCCCCAGATCGTGCATTGCATCGTGCGGTGGCTT
CCGGGCATGTGCATTCCATGATTTTGTGGGGACCGCCAGGGTGCGGCAAGACGACATTGTCATTGCTGTTAGCGCATTAC
ATTGATGCAGAATTTCGGTCAGTCTCGGCTGTTCTTTCGGGGTTGCCGGAGGTGCGTCAGATCTTGGCTGAGGCTGCGCA
GCGTTTTTCTGAAGGACGCCGCACCGTCTTGTTCGTGGACGAAGTGCATCGTTTTAACAAGATGCAGCAGGATGCGTTTC
TGCCGCATATCGAGCGTGGTTCCATTATTTTCGTTGGTGCCACTACTGAGAATCCATCCTTCGAATTGAACTCGGCGTTA
CTGTCGCGTTGCCGTGTCCACGTGTTGGAGGCAGTGTCGTCACAGGATATCGTTGTGGCATTGCAGCGGGCGTTGCAGGA
TACGGAGCGGGGTTTGGGTGGGCAGAAGATTGAAGTGTCTGAAGCCTATCTGTTGGAGATTGCCAAGGCTGCAGATGGTG
ACGTGCGTCGTGCGCTCACCTTGTTGGAGATTGCTGCTGAGCTTGCCCAGGATGAGGATGAGCAGATAACCGCTGACTTG
CTTTCGCAAGTGCTTGCCGATCGTAGTCGGCGCTTCGACAAACGGGGGGAGCAGTTCTATGACCAGATTTCGGCCTTGCA
CAAGAGTGTACGTAGTTCCAACCCGGATGCGGCGTTGTATTGGTTGCTGCGTATGCTGGATGGTGGTTGTGATCCTATCT
ACTTGGCGCGGCGCTTGACCCGCATGGCGATTGAGGATATTGGTTTGGCTGATCCGCGTGCACAGTCGATGGCTCTGGAG
GCTTGGGACATCTATGAGCGGTTGGGTAGCCCGGAGGGAGAGCTGGCGTTCGCACAGTTGGTGCTGTACTTGGCAAGTAC
TGCAAAATCGAATGCTGGCTATGTTGCGTTCAATGTGGCCAAGGAGGACATTCGCCAGACGGGTACCCAGGATGTTCCGC
TACGCCTGCGTAATGCACCGACCAGACTCATGAAAAGTCTCGGTTACGGTATCGGATATCAGTACGATCATGATGCTGAG
AACGGTGTTGCGCTGGAACAGACCTGTTTTCCCGATGCGCTGGGGGAGCGTATTTACTACCAACCGGTATCCCGCGGTCT
GGAGATTAAGCTGAAGGAGAAGTTGGACCAGTTGCGTGCAGCACGTGCTCAGATTCAAGCGGATAAGCCGCAGCGGCCGC
GTGCATAG

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (60-168)

• MgsA AAA+ ATPase C terminal (MgsA_C) (273-438)

• AAA C-terminal domain (AAA_assoc_2) (194-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	38.771	92.967	0.36