Detailed information NTG0554768

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: LZ752_RS03580
• Genome accession: NZ_CP090518
• Coordinates: 835686..837047 (+)
• Length: 453 a.a.
• NCBI ID: WP_011097739.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. fastidiosa strain Stag's Leap
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 830686..842047

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZ752_RS03570 (LZ752_03570)	-	832460..834370 (+)	1911	WP_004089128.1	DUF3857 domain-containing transglutaminase family protein	-
LZ752_RS03575 (LZ752_03575)	lolA	834932..835558 (+)	627	WP_004089126.1	outer membrane lipoprotein chaperone LolA	-
LZ752_RS03580 (LZ752_03580)	rarA	835686..837047 (+)	1362	WP_011097739.1	replication-associated recombination protein A	Machinery gene
LZ752_RS03585 (LZ752_03585)	crcB	837208..837609 (+)	402	WP_004089119.1	fluoride efflux transporter CrcB	-
LZ752_RS03590 (LZ752_03590)	-	838283..839779 (+)	1497	WP_004089113.1	ATP-binding protein	-
LZ752_RS03595 (LZ752_03595)	folK	839904..840428 (+)	525	WP_038231892.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-
LZ752_RS03600 (LZ752_03600)	-	840439..841176 (-)	738	WP_004089106.1	pteridine reductase	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 50554.75 Da
• Isoelectric Point: 6.7781

>NTDB_id=554768 LZ752_RS03580 WP_011097739.1 835686..837047(+) (rarA) [Xylella fastidiosa subsp. fastidiosa strain Stag's Leap]
MTRQRFPTLQHDLLGVAPLLQPLAERMRPRTLHEMVGQKRLLDPDRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAHY
IDAEFRSVSAVLSGLPEVRQILADAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIERGSIIFVGATTENPSFELNSAL
LSRCRVHVLEAVSSQDIVVALQRALQDTERGLGGQKIEVSQASLLEIAKAADGDVRRALTLLEIAAELAQDEQITADLLS
QVLADRSRRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRMLDGGCDPIYLARRLTRIAIEDIGLADPRAQSMALEAW
DIYERLGSPEGDLAFAQLVLYLASTAKSNAGYVAFNVAKEDIRQTGTQDVPLHLRNAPTRLMKSLGYGIEYQYDHDAENG
VALEQTCFPDALGERIYYQPVSRGLEIKLKEKLDWLRAARAQIQADKPQPPRA

Nucleotide

• Length: 1362 bp

>NTDB_id=554768 LZ752_RS03580 WP_011097739.1 835686..837047(+) (rarA) [Xylella fastidiosa subsp. fastidiosa strain Stag's Leap]
GTGACACGACAGCGCTTTCCGACTCTTCAGCATGATTTGCTTGGTGTGGCTCCTCTCTTGCAGCCACTGGCCGAGCGCAT
GCGTCCTCGTACTCTTCATGAGATGGTAGGACAGAAGCGCTTGCTTGACCCAGATCGTGCATTGCATCGTGCGGTTGCTT
CCGGGCATGTGCATTCCATGATTTTGTGGGGACCGCCAGGGTGCGGCAAGACGACATTGTCATTGCTGTTAGCGCATTAC
ATTGATGCAGAATTTCGGTCAGTCTCGGCTGTTCTTTCGGGGTTGCCGGAGGTGCGTCAGATCTTGGCTGACGCTGCGCA
GCGTTTTTCTGAAGGACGCCGCACCGTCTTGTTCGTGGACGAAGTGCATCGTTTTAACAAGATGCAGCAGGATGCGTTTC
TGCCGCATATCGAGCGTGGTTCCATTATTTTCGTTGGTGCCACTACTGAGAATCCATCCTTCGAATTGAACTCGGCGTTA
CTGTCGCGTTGCCGTGTCCACGTGTTGGAGGCAGTGTCGTCACAGGATATTGTTGTGGCATTGCAGCGGGCGTTGCAGGA
TACGGAGCGGGGTTTGGGTGGGCAGAAGATTGAAGTGTCTCAAGCCTCTCTGTTGGAGATTGCCAAGGCTGCAGATGGTG
ACGTGCGTCGTGCGCTCACCTTGTTGGAGATTGCTGCTGAGCTTGCCCAGGATGAGCAGATAACCGCTGACTTGCTTTCG
CAAGTGCTTGCCGATCGTAGTCGGCGCTTCGACAAACGGGGGGAGCAGTTCTATGACCAGATTTCGGCCTTGCACAAGAG
TGTACGTAGTTCCAACCCGGATGCGGCATTGTATTGGTTGCTGCGTATGCTGGATGGTGGTTGTGATCCTATCTACTTGG
CCCGGCGCTTGACCCGCATAGCGATTGAGGATATTGGTTTGGCTGATCCGCGTGCACAGTCGATGGCTCTGGAGGCTTGG
GATATCTATGAGCGGTTGGGTAGCCCGGAGGGAGATCTGGCGTTCGCGCAGTTGGTGCTGTACTTGGCAAGTACAGCAAA
ATCGAATGCTGGCTATGTTGCGTTCAATGTGGCCAAGGAGGACATTCGCCAGACGGGTACTCAGGATGTTCCGCTACATC
TGCGCAATGCACCGACCAGACTCATGAAAAGTCTCGGTTACGGTATCGAGTATCAGTACGATCATGATGCTGAGAACGGT
GTTGCGCTGGAACAGACTTGTTTTCCCGATGCGCTGGGGGAGCGTATTTACTATCAACCGGTATCCCGCGGTCTGGAGAT
TAAGCTGAAGGAGAAGTTGGACTGGTTGCGTGCAGCACGTGCTCAGATTCAAGCGGATAAGCCGCAGCCGCCGCGTGCAT
AG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (194-269)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (27-146)

• MgsA AAA+ ATPase C terminal (MgsA_C) (271-436)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.243	93.377	0.366