Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   J8G07_RS15075 Genome accession   NZ_CP072612
Coordinates   3058516..3059295 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain G10     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3053516..3064295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8G07_RS15045 fliH 3053560..3054315 (-) 756 WP_032874891.1 flagellar assembly protein FliH -
  J8G07_RS15050 fliG 3054308..3055324 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  J8G07_RS15055 fliF 3055337..3056947 (-) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  J8G07_RS15060 fliE 3056990..3057310 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  J8G07_RS15065 flgC 3057321..3057773 (-) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  J8G07_RS15070 flgB 3057773..3058162 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  J8G07_RS15075 codY 3058516..3059295 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  J8G07_RS15080 hslU 3059333..3060736 (-) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  J8G07_RS15085 hslV 3060753..3061298 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  J8G07_RS15090 xerC 3061314..3062231 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  J8G07_RS15095 trmFO 3062301..3063608 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=554642 J8G07_RS15075 WP_003154263.1 3058516..3059295(-) (codY) [Bacillus amyloliquefaciens strain G10]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=554642 J8G07_RS15075 WP_003154263.1 3058516..3059295(-) (codY) [Bacillus amyloliquefaciens strain G10]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471