Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   J8G07_RS11520 Genome accession   NZ_CP072612
Coordinates   2233298..2233564 (+) Length   88 a.a.
NCBI ID   WP_042635730.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain G10     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2228298..2238564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8G07_RS11500 - 2228563..2229864 (-) 1302 WP_032874010.1 hemolysin family protein -
  J8G07_RS11505 - 2230010..2230960 (+) 951 WP_032874012.1 magnesium transporter CorA family protein -
  J8G07_RS11510 comGA 2231157..2232227 (+) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  J8G07_RS11515 comGB 2232214..2233251 (+) 1038 WP_032874014.1 competence type IV pilus assembly protein ComGB Machinery gene
  J8G07_RS11520 comGC 2233298..2233564 (+) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  J8G07_RS11525 comGD 2233554..2233991 (+) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  J8G07_RS11530 comGE 2233975..2234289 (+) 315 WP_032874016.1 competence type IV pilus minor pilin ComGE Machinery gene
  J8G07_RS11535 comGF 2234294..2234698 (+) 405 WP_235588110.1 competence type IV pilus minor pilin ComGF -
  J8G07_RS11540 comGG 2234699..2235076 (+) 378 WP_032874019.1 competence type IV pilus minor pilin ComGG Machinery gene
  J8G07_RS11545 - 2235133..2235312 (+) 180 WP_022552966.1 YqzE family protein -
  J8G07_RS11550 - 2235353..2235682 (-) 330 WP_032874021.1 DUF3889 domain-containing protein -
  J8G07_RS11555 tapA 2235941..2236612 (+) 672 WP_032874023.1 amyloid fiber anchoring/assembly protein TapA -
  J8G07_RS11560 - 2236584..2237168 (+) 585 WP_032874025.1 signal peptidase I -
  J8G07_RS11565 - 2237233..2238018 (+) 786 WP_032874027.1 TasA family protein -
  J8G07_RS11570 sinR 2238066..2238401 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9721.32 Da        Isoelectric Point: 6.2027

>NTDB_id=554630 J8G07_RS11520 WP_042635730.1 2233298..2233564(+) (comGC) [Bacillus amyloliquefaciens strain G10]
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTACPNGKQILIS
GGEVTVEQ

Nucleotide


Download         Length: 267 bp        

>NTDB_id=554630 J8G07_RS11520 WP_042635730.1 2233298..2233564(+) (comGC) [Bacillus amyloliquefaciens strain G10]
ATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGATCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

74.648

80.682

0.602