Detailed information NTG0554289

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: LXM91_RS12965
• Genome accession: NZ_CP090477
• Coordinates: 2636389..2637657 (+)
• Length: 422 a.a.
• NCBI ID: WP_015240288.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain W0101
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2631389..2642657

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LXM91_RS12945 (LXM91_12945)	-	2632760..2633410 (-)	651	WP_007408203.1	tetratricopeptide repeat protein	-
LXM91_RS12950 (LXM91_12950)	mnmA	2633468..2634583 (-)	1116	WP_012118077.1	tRNA 2-thiouridine(34) synthase MnmA	-
LXM91_RS12955 (LXM91_12955)	-	2634620..2635759 (-)	1140	WP_039254379.1	cysteine desulfurase family protein	-
LXM91_RS12960 (LXM91_12960)	cymR	2635778..2636194 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
LXM91_RS12965 (LXM91_12965)	rarA	2636389..2637657 (+)	1269	WP_015240288.1	replication-associated recombination protein A	Machinery gene
LXM91_RS12970 (LXM91_12970)	-	2637773..2638537 (-)	765	WP_015240289.1	tRNA threonylcarbamoyladenosine dehydratase	-
LXM91_RS12980 (LXM91_12980)	aspS	2638863..2640641 (-)	1779	WP_020956140.1	aspartate--tRNA ligase	-
LXM91_RS12985 (LXM91_12985)	hisS	2640656..2641930 (-)	1275	WP_012118082.1	histidine--tRNA ligase	-
LXM91_RS12990 (LXM91_12990)	-	2642292..2642462 (-)	171	WP_099686884.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46661.51 Da
• Isoelectric Point: 7.9149

>NTDB_id=554289 LXM91_RS12965 WP_015240288.1 2636389..2637657(+) (rarA) [Bacillus amyloliquefaciens strain W0101]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALER
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=554289 LXM91_RS12965 WP_015240288.1 2636389..2637657(+) (rarA) [Bacillus amyloliquefaciens strain W0101]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGTGCAAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGACGAAGTGCACAGGCTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAACCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGGACCCAGATATTTGAGCTTGAACCGTTAACACCCGATCTGATCAAGCAGGCATTGGAAAGA
GCGCTCACAGATGAACACCGGGGGCTCGGTTCCTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCGCAAGG
GTGCGGAGGAGACGTCCGCTCCGCTTTGAACGCACTTGAGCTTGCCGTACTCTCCACAAAGGAATCAAGCGACGGCACGA
TCCGGATTACACGGGAGACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACTCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCTGCCTTCCAAAAATCGATCCGAGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGCGACCTTGAAAGCATATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAGGCGCTCAAAGACATCAGGACGGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCTCACGATTTCGAGAACGGATGGGTCGAACAGCAATATTTGCCTGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	91.211	99.763	0.91