Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   J6600_RS08185 Genome accession   NZ_CP072563
Coordinates   1639144..1639923 (+) Length   259 a.a.
NCBI ID   WP_209388235.1    Uniprot ID   -
Organism   Bacillus sp. LJBV19     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1634144..1644923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6600_RS08165 (J6600_08165) trmFO 1634831..1636138 (+) 1308 WP_209388234.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  J6600_RS08170 (J6600_08170) xerC 1636208..1637125 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  J6600_RS08175 (J6600_08175) hslV 1637141..1637686 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  J6600_RS08180 (J6600_08180) hslU 1637694..1639106 (+) 1413 WP_257986734.1 HslU--HslV peptidase ATPase subunit -
  J6600_RS08185 (J6600_08185) codY 1639144..1639923 (+) 780 WP_209388235.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  J6600_RS08190 (J6600_08190) flgB 1640277..1640666 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  J6600_RS08195 (J6600_08195) flgC 1640666..1641118 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  J6600_RS08200 (J6600_08200) fliE 1641129..1641449 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  J6600_RS08205 (J6600_08205) fliF 1641492..1643108 (+) 1617 WP_209388236.1 flagellar basal-body MS-ring/collar protein FliF -
  J6600_RS08210 (J6600_08210) fliG 1643121..1644137 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  J6600_RS08215 (J6600_08215) fliH 1644130..1644885 (+) 756 WP_038458013.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29070.27 Da        Isoelectric Point: 4.6062

>NTDB_id=554227 J6600_RS08185 WP_209388235.1 1639144..1639923(+) (codY) [Bacillus sp. LJBV19]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENERMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=554227 J6600_RS08185 WP_209388235.1 1639144..1639923(+) (codY) [Bacillus sp. LJBV19]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGAACGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGAACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

98.842

100

0.988
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467