Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LZ175_RS01210 Genome accession   NZ_CP090448
Coordinates   259142..259906 (-) Length   254 a.a.
NCBI ID   WP_001136201.1    Uniprot ID   -
Organism   Escherichia coli strain PT62     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 254142..264906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ175_RS01185 (LZ175_01185) yhhJ 255985..257109 (+) 1125 WP_001216257.1 ABC transporter permease -
  LZ175_RS01190 (LZ175_01190) - 257182..257456 (+) 275 Protein_235 type II toxin-antitoxin system HicA family toxin -
  LZ175_RS01195 (LZ175_01195) - 257453..257812 (+) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  LZ175_RS01200 (LZ175_01200) nikR 257932..258333 (-) 402 WP_001190067.1 nickel-responsive transcriptional regulator NikR -
  LZ175_RS01205 (LZ175_01205) nikE 258339..259145 (-) 807 WP_000173696.1 nickel import ATP-binding protein NikE -
  LZ175_RS01210 (LZ175_01210) amiE 259142..259906 (-) 765 WP_001136201.1 nickel import ATP-binding protein NikD Regulator
  LZ175_RS01215 (LZ175_01215) nikC 259906..260739 (-) 834 WP_001008803.1 nickel ABC transporter permease subunit NikC -
  LZ175_RS01220 (LZ175_01220) nikB 260736..261680 (-) 945 WP_000947087.1 nickel ABC transporter permease subunit NikB -
  LZ175_RS01225 (LZ175_01225) nikA 261680..263254 (-) 1575 WP_000953385.1 nickel ABC transporter substrate-binding protein -
  LZ175_RS01230 (LZ175_01230) acpT 263365..263952 (-) 588 WP_000285783.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26780.35 Da        Isoelectric Point: 6.2250

>NTDB_id=554028 LZ175_RS01210 WP_001136201.1 259142..259906(-) (amiE) [Escherichia coli strain PT62]
MPQQIELRDIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLRTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=554028 LZ175_RS01210 WP_001136201.1 259142..259906(-) (amiE) [Escherichia coli strain PT62]
ATGCCGCAACAGATTGAACTGCGCGATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGGCGCTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTACGCACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCACGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTTTGCGAATCACCG
TTTATCATCGCCGATGAACCAACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAGGCACCGGGGATGCTGCTGGTCACCCATGATATGGGCGTAGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCTGACGGTAAGATTGTCGAACAGGGCGATGTCGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

42

98.425

0.413
  amiE Streptococcus thermophilus LMD-9

42

98.425

0.413
  amiE Streptococcus salivarius strain HSISS4

40.8

98.425

0.402