Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   J7S31_RS01350 Genome accession   NZ_CP072523
Coordinates   254046..254969 (+) Length   307 a.a.
NCBI ID   WP_002986000.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain SHZ-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 249046..259969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7S31_RS01335 (J7S31_01350) amiC 250546..252048 (+) 1503 WP_011054186.1 ABC transporter permease Regulator
  J7S31_RS01340 (J7S31_01355) amiD 252048..252974 (+) 927 WP_011054187.1 oligopeptide ABC transporter permease OppC Regulator
  J7S31_RS01345 (J7S31_01360) amiE 252983..254053 (+) 1071 WP_002992231.1 ABC transporter ATP-binding protein Regulator
  J7S31_RS01350 (J7S31_01365) amiF 254046..254969 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  J7S31_RS01355 (J7S31_01375) - 255117..255362 (-) 246 WP_030126956.1 hypothetical protein -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34715.90 Da        Isoelectric Point: 6.5113

>NTDB_id=553850 J7S31_RS01350 WP_002986000.1 254046..254969(+) (amiF) [Streptococcus pyogenes strain SHZ-1]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGQILYDGKVINGRKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERQKELVVYHPDQHDYTLDKPSMVEIKPNHFVWANQAEIEKYQKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=553850 J7S31_RS01350 WP_002986000.1 254046..254969(+) (amiF) [Streptococcus pyogenes strain SHZ-1]
ATGTCTGAGAAATTAGTCGAAGTAAAAGACCTAGAAATTTCCTTCGGAGAAGGAAAGAAAAAATTTGTTGCAGTTAAAAA
TGCTAATTTCTTTATTAAAAAAGGAGAAACCTTTTCTTTAGTTGGAGAATCTGGGAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAACGATACTAGCTCAGGTCAAATTTTATACGATGGGAAAGTAATTAATGGCAGAAAATCAAAGTCA
GAAGCCAATGAGCTCATTCGTAAAATTCAAATGATTTTCCAAGATCCCGCTGCTAGTTTGAATGAACGGGCAACCGTTGA
CTACATCATTTCAGAAGGTCTTTATAACTTTAATCTGTTTAAAACAGAGGAAGAACGTAAAGAAAAAATTAAGAACATGA
TGGCCGAAGTTGGTTTGCTATCAGAGCATTTGACGCGCTACCCTCATGAATTTTCAGGAGGTCAACGTCAGCGGATCGGT
ATCGCTAGAGCCCTAGTAATGAACCCTGAATTCGTTATTGCTGATGAGCCGATTTCAGCTTTGGACGTTTCCGTTCGCGC
ACAGGTTTTAAACCTTCTCAAACGGATGCAAGCCGAAAAAGGTTTGACTTATCTCTTCATTGCCCATGATCTTTCAGTCG
TTCGCTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGGGTTATTGTAGAAGTTGCAGAAACAGAAGAACTGTTTAAT
AACCCAATTCATCCCTACACCCAATCTTTGTTATCAGCCGTGCCTATCCCAGATCCAATTTTAGAGCGTCAAAAAGAACT
TGTTGTCTATCATCCAGACCAGCATGATTATACATTAGATAAGCCATCAATGGTTGAAATCAAACCAAATCACTTTGTTT
GGGCAAACCAAGCAGAAATTGAAAAATATCAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

82.353

99.674

0.821
  amiF Streptococcus thermophilus LMD-9

82.026

99.674

0.818
  amiF Streptococcus salivarius strain HSISS4

82.026

99.674

0.818