Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   J7M37_RS00465 Genome accession   NZ_CP072504
Coordinates   123299..125131 (+) Length   610 a.a.
NCBI ID   WP_034880196.1    Uniprot ID   -
Organism   Bifidobacterium pseudocatenulatum strain N2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 118299..130131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7M37_RS00445 (J7M37_00445) thiS 118696..118890 (-) 195 WP_055062916.1 sulfur carrier protein ThiS -
  J7M37_RS00450 (J7M37_00450) - 119447..120412 (+) 966 WP_209107355.1 aldo/keto reductase -
  J7M37_RS00455 (J7M37_00455) - 120530..121024 (+) 495 WP_022244787.1 MarR family transcriptional regulator -
  J7M37_RS00460 (J7M37_00460) - 121330..123189 (+) 1860 Protein_86 ABC transporter ATP-binding protein -
  J7M37_RS00465 (J7M37_00465) rcrQ 123299..125131 (+) 1833 WP_034880196.1 ABC transporter ATP-binding protein Regulator
  J7M37_RS00470 (J7M37_00470) - 125217..126185 (-) 969 WP_209107357.1 FAD:protein FMN transferase -
  J7M37_RS00475 (J7M37_00475) - 126322..127698 (+) 1377 WP_209107358.1 MFS transporter -
  J7M37_RS00480 (J7M37_00480) - 128160..129854 (+) 1695 WP_245157512.1 FTR1 family protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 66665.20 Da        Isoelectric Point: 5.7914

>NTDB_id=553789 J7M37_RS00465 WP_034880196.1 123299..125131(+) (rcrQ) [Bifidobacterium pseudocatenulatum strain N2]
MPGGPMGRGRGAVEKPQDFGGVMKKLVHFCRHYIPAIIVALVLGAIGTVCQIVGPDKLKDMTNEIAKGLPALVNGKPVLG
AIDMDAVTHIAWLLVALYVGYAVLCYVQSWMMANVTQRTAQELREAISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQ
TLGQSVGSLITSVTLFVGALIMMFYNNVIMTVCAIASSLVGLLIMGAIMKVSQKYFSRQQIALGDVNGHVEEMYAGHTVV
KAYCGEADSIRAFEKYNGDLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAVLAMDGKIEFGVIVAFMMYIRLFTQP
LSQFAQAFQNLQRCAAASERVFSFLEEPEMADESDKQALLGVNGKPVRGDVEFSHVKFGYDPSKTIINDFSASVKSGQKV
AIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPDVTDKQIEDA
CKAVGLHHYIMSLPNGYDTVLDDKATLSQGQKQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFV
IAHRLSTIRDADMILVMNHGDIVESGTHEELLAKGGFYADIYNSQFALTD

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=553789 J7M37_RS00465 WP_034880196.1 123299..125131(+) (rcrQ) [Bifidobacterium pseudocatenulatum strain N2]
ATGCCAGGAGGACCTATGGGACGCGGCCGCGGGGCCGTTGAAAAACCGCAGGATTTCGGTGGTGTGATGAAGAAACTGGT
GCATTTCTGCCGCCACTACATTCCCGCCATCATTGTGGCGCTCGTATTGGGCGCGATCGGCACGGTATGCCAGATCGTCG
GTCCGGACAAACTCAAGGACATGACCAACGAGATCGCCAAAGGCCTGCCTGCGCTAGTCAATGGCAAGCCGGTGCTCGGT
GCGATCGACATGGACGCGGTCACGCACATCGCATGGCTGCTGGTGGCGCTGTATGTGGGGTACGCGGTGCTGTGCTACGT
GCAAAGCTGGATGATGGCGAACGTCACGCAGCGCACCGCACAGGAGCTGCGCGAAGCCATCAGCGTGAAGATCAACAAGC
TGCCGCTCAAGTATTTCGACAAGGTCAGCTACGGCGATGTGCTCAGCCGCATCACCAACGATGTGGACGCCATCGGCCAG
ACGCTCGGCCAGTCGGTCGGCTCGCTGATCACGTCGGTCACGCTGTTCGTGGGCGCGCTCATCATGATGTTCTACAACAA
TGTGATTATGACGGTGTGCGCCATCGCTTCCAGCCTGGTTGGCCTGCTCATCATGGGCGCAATCATGAAGGTTTCGCAGA
AGTACTTCTCCCGTCAGCAGATCGCATTGGGCGATGTCAACGGTCACGTCGAAGAGATGTACGCCGGCCACACCGTGGTC
AAGGCGTATTGCGGCGAGGCTGATTCGATTCGCGCGTTCGAAAAGTACAACGGCGATTTGTACGATTCGGGATGGAAGAG
CCAGTTCCTTTCCGGCCTGATGATGCCGTTGATGAATTTCGTCGGCAATTTCGGCTACGTGGTTGTGTGCGTGGTTGGCG
CTGTGCTTGCGATGGATGGCAAGATCGAGTTTGGTGTGATCGTTGCGTTCATGATGTACATTCGACTGTTCACCCAGCCG
CTTTCCCAGTTCGCGCAGGCATTCCAGAACCTGCAGCGTTGCGCGGCCGCTTCCGAGCGCGTGTTCAGCTTCCTTGAAGA
GCCGGAGATGGCCGACGAATCCGACAAGCAGGCGCTGCTCGGCGTGAACGGCAAACCGGTGCGCGGTGACGTTGAGTTCA
GTCATGTGAAGTTCGGTTACGATCCGAGCAAGACGATCATCAACGATTTCTCCGCTTCGGTGAAGTCCGGTCAGAAGGTT
GCGATTGTTGGTCCGACCGGTGCCGGCAAGACCACGATGGTGAATCTGCTGATGCGTTTCTATGAGATTTCGGGCGGTTC
GATTGCGATTGATGGTGTGGATACGAAGTCCGTGCCACGCTGGAACGTGCATGACCAGTTCTCCATGGTATTGCAGGATA
CGTGGGTGTTCCGTGGAACAGTGCGTGAAAACATCGCGTATTCGAAGCCGGACGTCACCGACAAGCAGATCGAGGACGCA
TGCAAGGCCGTGGGGCTGCACCACTACATCATGTCGCTGCCGAATGGCTATGACACAGTGCTTGACGACAAGGCCACGCT
TTCGCAGGGTCAGAAGCAGTTGCTCACCATTGCGCGAGCCATGGTTGAGGATGCGCCGATTCTGATTCTCGACGAGGCCA
CCTCTTCGGTCGATACGCGTACGGAAGAGCTGATTCAGAAGGCCATGGACGCGCTGACCGTGGACCGTACGTCGTTCGTG
ATCGCGCACCGTCTGTCCACCATCCGCGATGCGGACATGATTTTGGTCATGAACCATGGCGACATCGTGGAAAGCGGTAC
GCATGAGGAGCTGCTCGCCAAAGGCGGTTTCTACGCCGACATCTACAACAGCCAGTTCGCCCTCACCGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(38-321)

ABC transporter (ABC_tran)

(388-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.333

95.902

0.511