Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   J7M36_RS00745 Genome accession   NZ_CP072503
Coordinates   192046..193803 (+) Length   585 a.a.
NCBI ID   WP_080821571.1    Uniprot ID   -
Organism   Bifidobacterium dentium strain E7     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 187046..198803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7M36_RS00720 (J7M36_00720) - 187105..188019 (-) 915 WP_209057359.1 thiazole synthase -
  J7M36_RS00725 (J7M36_00725) thiF 188050..188763 (-) 714 WP_080821575.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  J7M36_RS00730 (J7M36_00730) thiS 189012..189206 (-) 195 WP_003837883.1 sulfur carrier protein ThiS -
  J7M36_RS00735 (J7M36_00735) - 190071..191096 (+) 1026 WP_143248204.1 aldo/keto reductase -
  J7M36_RS00740 (J7M36_00740) - 191260..191760 (+) 501 WP_168445308.1 MarR family transcriptional regulator -
  J7M36_RS00745 (J7M36_00745) rcrP 192046..193803 (+) 1758 WP_080821571.1 ABC transporter ATP-binding protein Regulator
  J7M36_RS00750 (J7M36_00750) rcrQ 193805..195643 (+) 1839 WP_143248200.1 ABC transporter ATP-binding protein Regulator
  J7M36_RS00755 (J7M36_00755) - 195763..196902 (-) 1140 WP_080821569.1 ATP-binding protein -
  J7M36_RS00760 (J7M36_00760) - 197080..198126 (-) 1047 WP_080821568.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64314.31 Da        Isoelectric Point: 5.0906

>NTDB_id=553784 J7M36_RS00745 WP_080821571.1 192046..193803(+) (rcrP) [Bifidobacterium dentium strain E7]
MLRIMRYLSKAEIGQMLIALVSIIGQIWLDLTLPDYMSNITELVETPGSSMSDIWVAGGKMLAISLGSAACAVVTGYIAA
RVGASFSQRLRSLEFNKVESFGPAEMNRFSTASLITRSTNDITQIQMFITMGLMMIVKSPIMAVWAVCKIAGDGFEWTLA
TGIAVAVLLVAIGILMALVMPKFKSMQRLTDNINLVARENLTGLRVVRAYNAEDYQESKFTQANKELTETQLFTNRAMAV
MMPLMNTIMNGLMLAVYWIGAYLIEAADATDKLTTFANMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVLEVIDTE
PMVVDGSRTAGKSGMEGDIEFRNVSFTYPDSREAMLEGISFKAAKGQTVAFIGSTGSGKSSLINLVPRFYDATQGEVLVD
GVNVRDYTLKALRDKIGYVPQQAFLFKGTIAGNVAYGDTELRERDVKDACDVAQATEFIDKKEHGYESDISQGGANVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAKEAKDSTKLIVAQRIGTIMDADRIVVLDEGRVVGQGTHRE
LLETCDVYRQIAQSQLSEDELKGGR

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=553784 J7M36_RS00745 WP_080821571.1 192046..193803(+) (rcrP) [Bifidobacterium dentium strain E7]
ATGCTTCGCATCATGCGATACCTCTCCAAAGCGGAGATAGGCCAGATGCTCATAGCGTTGGTCAGCATCATCGGTCAGAT
CTGGCTTGATCTGACCCTGCCGGACTACATGTCCAATATCACCGAACTTGTTGAAACTCCGGGCAGCAGCATGTCCGACA
TCTGGGTGGCCGGCGGCAAAATGCTCGCCATCTCACTGGGATCCGCGGCCTGCGCCGTCGTGACCGGCTACATCGCTGCA
CGCGTGGGCGCCTCATTCAGCCAAAGGCTACGCTCGCTGGAGTTCAACAAGGTCGAAAGCTTCGGACCGGCGGAAATGAA
CCGCTTCTCCACCGCGTCGCTCATCACCCGCTCCACGAACGACATTACGCAGATCCAGATGTTCATCACCATGGGCCTGA
TGATGATCGTCAAGTCGCCAATCATGGCCGTGTGGGCAGTATGCAAGATTGCGGGCGACGGATTCGAATGGACGCTCGCC
ACTGGCATCGCCGTGGCGGTACTGCTGGTCGCGATCGGCATTCTGATGGCGCTGGTCATGCCGAAATTCAAGTCCATGCA
GCGTCTGACGGACAACATCAACCTGGTGGCGCGCGAAAACCTGACCGGCCTGCGCGTGGTGCGCGCCTACAACGCCGAAG
ACTATCAGGAATCGAAATTCACGCAGGCCAACAAGGAACTGACCGAAACCCAGCTGTTCACCAACCGTGCCATGGCGGTC
ATGATGCCGCTGATGAACACCATCATGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCATACCTGATCGAAGCGGC
CGACGCCACCGACAAACTCACCACCTTCGCGAACATGGTGGTGTTCTCCAGCTATTCCGTGCAGGTGATCATGAGCTTCC
TGCTGATGAGCATGGTATTCGTGCTGTGGCCGCGCGCCGACGTATCCGCACAGCGCGTGCTTGAAGTGATCGACACCGAG
CCGATGGTCGTAGATGGCAGCCGGACTGCGGGAAAGTCCGGCATGGAAGGCGACATCGAATTCCGCAACGTGAGCTTCAC
CTACCCGGATTCGCGCGAGGCCATGCTGGAAGGCATCAGCTTCAAAGCCGCAAAAGGTCAGACGGTCGCGTTCATCGGCT
CGACCGGCTCCGGCAAATCGTCGCTGATCAATCTGGTGCCGCGCTTCTACGACGCCACCCAGGGCGAAGTGCTCGTCGAC
GGCGTGAATGTGCGCGACTACACGCTCAAGGCATTGCGCGACAAGATTGGCTACGTGCCGCAACAGGCGTTCCTGTTCAA
GGGCACCATCGCCGGCAATGTGGCGTACGGCGACACCGAACTGCGCGAACGGGACGTGAAGGATGCTTGCGATGTCGCGC
AGGCCACGGAATTCATCGACAAGAAGGAACATGGCTACGAATCCGACATTTCGCAAGGCGGCGCCAACGTGTCCGGCGGG
CAGAAGCAACGGCTGTCAATCGCAAGGGCCGTGTATCGGCATCCGGAAATCCTCATCTTCGACGACTCCTTCTCCGCACT
TGACTTCAAAACGGACCGTGCCGTACGCGACGCGCTCGCGAAGGAGGCCAAGGATTCCACGAAACTGATCGTCGCGCAGC
GCATCGGCACCATCATGGATGCCGACCGCATCGTCGTGCTCGACGAAGGCAGGGTGGTCGGACAGGGCACGCACCGTGAA
CTGCTCGAGACCTGCGATGTGTATCGGCAGATCGCGCAATCGCAGCTGAGCGAAGACGAACTGAAGGGAGGCCGCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-293)

ABC transporter (ABC_tran)

(356-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50

100

0.513