Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   J7M35_RS00875 Genome accession   NZ_CP072502
Coordinates   214789..216627 (+) Length   612 a.a.
NCBI ID   WP_003844716.1    Uniprot ID   D2Q791
Organism   Bifidobacterium dentium strain N8     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 209789..221627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7M35_RS00855 (J7M35_00855) thiS 209970..210164 (-) 195 WP_209163927.1 sulfur carrier protein ThiS -
  J7M35_RS00860 (J7M35_00860) - 211029..212054 (+) 1026 WP_163194543.1 aldo/keto reductase -
  J7M35_RS00865 (J7M35_00865) - 212222..212722 (+) 501 WP_209163928.1 MarR family transcriptional regulator -
  J7M35_RS00870 (J7M35_00870) - 213031..214787 (+) 1757 Protein_169 ABC transporter ATP-binding protein -
  J7M35_RS00875 (J7M35_00875) rcrQ 214789..216627 (+) 1839 WP_003844716.1 ABC transporter ATP-binding protein Regulator
  J7M35_RS00880 (J7M35_00880) - 216747..217886 (-) 1140 WP_209163929.1 ATP-binding protein -
  J7M35_RS00885 (J7M35_00885) - 218063..219109 (-) 1047 WP_209163930.1 FAD:protein FMN transferase -
  J7M35_RS00890 (J7M35_00890) - 219302..220708 (+) 1407 WP_209163931.1 MFS transporter -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 67176.82 Da        Isoelectric Point: 6.6583

>NTDB_id=553780 J7M35_RS00875 WP_003844716.1 214789..216627(+) (rcrQ) [Bifidobacterium dentium strain N8]
MPRGPMGRGPAEKPKDFGGVMKKLIRFCRRYIPVIIIALVLGAAGTVCQIIGPDKLKDMTNEITKGLPAIVHGKPVMNSI
DFTAVGRIAWLLVALYVGYAVLCYLQSWLMASVTQRTAQQLREEIGRKINRLPLKYFDKVSYGDVLSRITNDVDAIGQTL
GQSLGSLITSVTLFFGALIMMFYNNVILTLCAIGSALLGLIVMGGIMKASQQYFARQQAALGDVNGHVEEMYTGHTVVKA
YGGEADSISRFERYNQDLYVSGWKSQFLSGLMMPLMNFIGNFGYVVVCVVGAVLAMDGKIEFGVIVAFMMYIRLFTQPLS
QFAQAFQNLQRCAAASERVFGFLEEPELADESDKRPLLGVDADGRPQPVRGDVEFSHVRFGYESDKTIIHDFSASVKSGQ
KVAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKKGVTDEQIV
AACKAVGLHHYIMSLPDGYDTILDDKASLSQGQKQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRTS
FVIAHRLSTIRDADMILVMDGGDIVERGTHEELLAKGGFYADIYNSQFTLAG

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=553780 J7M35_RS00875 WP_003844716.1 214789..216627(+) (rcrQ) [Bifidobacterium dentium strain N8]
ATGCCTAGGGGACCAATGGGACGTGGACCTGCTGAAAAACCGAAGGATTTCGGCGGTGTGATGAAGAAACTCATACGTTT
CTGCCGCCGCTACATTCCCGTGATCATCATCGCGCTGGTGCTTGGCGCAGCCGGAACCGTATGCCAGATCATCGGGCCCG
ACAAACTCAAGGACATGACCAATGAGATCACCAAGGGACTGCCGGCCATCGTACACGGCAAGCCGGTGATGAACTCGATC
GACTTCACCGCGGTCGGCCGTATCGCATGGCTGCTGGTGGCGTTGTATGTCGGCTATGCGGTGCTGTGCTATCTGCAAAG
CTGGCTGATGGCAAGCGTGACGCAACGCACCGCGCAACAGCTGCGCGAGGAGATCGGCCGGAAGATCAATCGCCTGCCGC
TCAAATATTTCGACAAGGTCAGCTACGGCGATGTGCTGAGCCGCATTACCAACGATGTGGACGCGATCGGGCAGACGCTC
GGCCAGTCGCTGGGCTCGCTGATTACGTCGGTCACGCTGTTCTTCGGTGCGCTGATCATGATGTTCTACAACAACGTGAT
CCTAACGTTGTGCGCCATCGGCTCCGCACTGCTCGGCCTGATCGTGATGGGCGGCATCATGAAGGCCTCGCAACAATACT
TCGCGCGCCAGCAGGCGGCCCTCGGCGATGTGAACGGCCATGTTGAGGAGATGTATACCGGGCATACCGTGGTCAAGGCG
TACGGTGGCGAGGCCGATTCCATCAGCCGTTTCGAACGCTACAACCAGGACCTGTACGTGTCTGGCTGGAAGAGCCAGTT
CCTGTCCGGCCTGATGATGCCGCTGATGAATTTCATCGGTAATTTCGGCTATGTGGTCGTATGCGTGGTCGGTGCGGTGC
TTGCGATGGATGGCAAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACGCAGCCGCTGTCG
CAGTTCGCGCAGGCCTTCCAGAACCTGCAACGCTGCGCCGCCGCATCCGAGCGCGTGTTCGGCTTCCTGGAGGAGCCGGA
GTTGGCCGACGAATCCGATAAACGGCCGTTGCTTGGCGTCGATGCGGACGGCAGGCCGCAACCGGTGCGTGGTGACGTGG
AATTCAGCCACGTACGCTTCGGCTACGAATCCGACAAAACGATCATCCACGACTTCTCCGCTTCGGTGAAGTCCGGTCAG
AAGGTCGCCATCGTCGGCCCGACCGGTGCCGGCAAGACCACGATGGTGAACCTGCTTATGCGCTTCTACGAGATTTCCGG
CGGCACGATTTCGATTGATGGCGTCGATACCAAATCGGTGCCGCGCTGGAATGTGCACGATCAGTTCTCGATGGTGCTGC
AGGATACGTGGGTGTTCCGTGGAACGGTGCGTGAAAACATCGCATATTCCAAGAAGGGCGTGACCGACGAGCAGATCGTC
GCCGCATGCAAGGCCGTTGGGTTGCACCACTACATCATGTCGCTGCCGGATGGCTATGACACGATTCTCGATGACAAGGC
GTCGCTGTCGCAGGGTCAGAAGCAGTTGCTGACGATTGCGCGCGCGATGGTGGAGGATGCGCCGATTCTGATTCTGGACG
AGGCGACCTCTTCCGTCGATACGCGTACCGAAGAACTGATTCAGAAGGCGATGGACGCGCTGACGGTGGGGCGTACGAGT
TTCGTGATCGCGCATCGCCTGTCGACGATTCGTGACGCCGACATGATTCTGGTGATGGACGGCGGCGATATCGTAGAGCG
CGGTACACACGAGGAGCTGCTTGCGAAGGGTGGTTTCTACGCCGATATCTACAACAGCCAGTTCACGCTGGCTGGCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(390-537)

ABC transporter transmembrane region (ABC_membrane)

(35-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D2Q791

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.484

96.569

0.526