Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   J7M31_RS09940 Genome accession   NZ_CP072500
Coordinates   2272881..2274710 (-) Length   609 a.a.
NCBI ID   WP_209153257.1    Uniprot ID   -
Organism   Bifidobacterium longum strain K5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2267881..2279710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7M31_RS10660 - 2267997..2268374 (+) 378 WP_033889208.1 hypothetical protein -
  J7M31_RS09920 (J7M31_09920) rsmI 2268401..2269411 (-) 1011 WP_032746934.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  J7M31_RS09930 (J7M31_09930) - 2270109..2271527 (-) 1419 WP_209153255.1 MFS transporter -
  J7M31_RS09935 (J7M31_09935) - 2271682..2272728 (+) 1047 WP_209153256.1 FAD:protein FMN transferase -
  J7M31_RS09940 (J7M31_09940) rcrQ 2272881..2274710 (-) 1830 WP_209153257.1 ABC transporter ATP-binding protein Regulator
  J7M31_RS09945 (J7M31_09945) rcrP 2274923..2276794 (-) 1872 WP_209153258.1 ABC transporter ATP-binding protein Regulator
  J7M31_RS09950 (J7M31_09950) - 2277046..2277576 (-) 531 WP_012472097.1 MarR family transcriptional regulator -
  J7M31_RS09955 (J7M31_09955) - 2277938..2278501 (+) 564 WP_007055052.1 BRO family protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66563.86 Da        Isoelectric Point: 5.8185

>NTDB_id=553772 J7M31_RS09940 WP_209153257.1 2272881..2274710(-) (rcrQ) [Bifidobacterium longum strain K5]
MPRGPMGGRRAVEEPHDFGKVMGKLVNYCRNYLPVIIIALILGAAGTVCQIIGPDKLKDMTNEIVKGLPAIVNGKPVMNS
VDFGTVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSVTLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKSSQKYFARQQMALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALDGQIEFGVIVAFMMYVRLFTQPL
AQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKSALLGANGHEVKGDVEFSHVQFGYEPGKPIINDFSASVSAGQKVA
IVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENVAYSKPGVTNKQIEDAC
KAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=553772 J7M31_RS09940 WP_209153257.1 2272881..2274710(-) (rcrQ) [Bifidobacterium longum strain K5]
ATGCCAAGAGGACCAATGGGCGGCAGGCGTGCCGTCGAAGAGCCCCATGATTTCGGCAAAGTCATGGGCAAGCTCGTGAA
CTATTGCCGCAACTATCTTCCCGTCATCATCATCGCGCTCATCCTGGGCGCGGCCGGCACCGTCTGCCAGATCATCGGCC
CGGACAAGCTCAAGGACATGACCAACGAAATCGTCAAAGGTCTGCCCGCCATCGTTAACGGCAAGCCGGTGATGAACTCG
GTCGATTTCGGCACGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGACTGCGCGAGTCCATCTCGGTCAAAATCAACAAACTGC
CGCTCAAATACTTCGACAAGGTTAGCTACGGCGACGTGCTGTCGCGCATAACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATTACCTCGGTGACGCTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGTCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGATGGCGCTGGGTGACGTCAACGGCCACGTGGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCATACAACGGCGAGGCCGATTCGATTCGTCGCTTCGAGAAGTACAACTCGGACCTCTACGAGTCCGGCTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAATTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCGCTCGACGGGCAGATCGAGTTCGGTGTGATCGTGGCGTTCATGATGTATGTCCGCCTGTTCACCCAGCCGTTG
GCGCAGTTCGCCCAGGCCTTCCAGAACCTGCAGCGTTGCGCGGCGGCCGCCGAACGCGTGTTCGGCTTCCTTGAGGAGCC
GGAGATGGAGGACGAATCCGGCAAGTCCGCTTTGCTTGGGGCCAACGGTCACGAAGTGAAGGGCGACGTGGAATTCAGCC
ACGTGCAGTTCGGCTACGAGCCGGGCAAGCCGATTATCAACGACTTCTCCGCTTCAGTCTCGGCCGGTCAGAAGGTCGCC
ATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTGATGCGCTTCTATGAGATTTCCGGCGGTTCGAT
TTCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGTTGCAGGATACGT
GGGTGTTCCGCGGCACTGTGCGCGAGAACGTCGCTTACTCCAAGCCTGGCGTGACCAACAAGCAAATCGAGGATGCGTGC
AAGGCCGTGGGCCTCGACCACTTCATCCGCTCACTGCCGGACGGCTATGACACCGTGCTCGATGACAAGTCGTCGCTCTC
CCAGGGCCAGAAGCAGCTGCTGACCATCGCCCGCGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACGAGGCCACCT
CCTCGGTCGATACCCGTACTGAAGAGCTGATTCAGAAGGCCATGGATGCGCTGACCGTGGGGCGTACGAGCTTTGTGATC
GCGCATCGCCTCTCCACGATTCGCGACGCCGACATGATCCTCGTCATGAACCACGGCGACGTGATCGAGCGCGGCACGCA
TGATGAACTGCTGGCGGCGGGCGGTTTTTACGCCGACCTCTACAACAGCCAGTTCGCGCTTGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(387-534)

ABC transporter transmembrane region (ABC_membrane)

(38-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.701

96.059

0.525