Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LY257_RS05385 Genome accession   NZ_CP090367
Coordinates   1107957..1109132 (+) Length   391 a.a.
NCBI ID   WP_000059584.1    Uniprot ID   -
Organism   Helicobacter pylori strain CCUG 17875     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1102957..1114132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY257_RS05360 (LY257_05300) - 1103199..1104095 (+) 897 WP_000697557.1 OriC activity response regulator -
  LY257_RS05365 (LY257_05305) - 1104350..1105186 (+) 837 WP_000556230.1 5'-3' exonuclease -
  LY257_RS05370 (LY257_05310) - 1105295..1106545 (-) 1251 WP_001199579.1 hypothetical protein -
  LY257_RS05375 (LY257_05315) - 1106713..1107579 (+) 867 WP_000045861.1 DnaJ family protein -
  LY257_RS05380 (LY257_05320) - 1107589..1107960 (+) 372 WP_000332999.1 heat shock protein transcriptional repressor HspR -
  LY257_RS05385 (LY257_05325) rarA 1107957..1109132 (+) 1176 WP_000059584.1 replication-associated recombination protein A Machinery gene
  LY257_RS05390 (LY257_05330) fur 1109292..1109744 (+) 453 WP_000824990.1 ferric iron uptake transcriptional regulator -
  LY257_RS05395 (LY257_05335) - 1109765..1110262 (-) 498 WP_001241700.1 DUF2147 domain-containing protein -
  LY257_RS05400 (LY257_05340) - 1110259..1110795 (-) 537 WP_000963973.1 YhcH/YjgK/YiaL family protein -
  LY257_RS05405 (LY257_05345) fliY 1110822..1111685 (-) 864 WP_001150613.1 flagellar motor switch protein FliY -
  LY257_RS05410 (LY257_05350) fliM 1111689..1112753 (-) 1065 WP_000763581.1 flagellar motor switch protein FliM -
  LY257_RS05415 (LY257_05355) - 1112746..1113513 (-) 768 WP_000602420.1 RNA polymerase sigma factor FliA -
  LY257_RS05420 (LY257_05360) - 1113491..1113805 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43835.56 Da        Isoelectric Point: 7.7360

>NTDB_id=553728 LY257_RS05385 WP_000059584.1 1107957..1109132(+) (rarA) [Helicobacter pylori strain CCUG 17875]
MSLTALLNPTSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIACMLERPILLFNAMDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLASSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPHSKDYLYPHDYNGYIKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=553728 LY257_RS05385 WP_000059584.1 1107957..1109132(+) (rarA) [Helicobacter pylori strain CCUG 17875]
ATGAGCCTGACTGCGCTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCTGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGATGGATTTTAAGCTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAGCCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTACCTTTTAAACAACAGCGCTGGCGACGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCGTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTACTATCTGGCGCGCCTGATTGCTGGCGGGGAAAATCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGTGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCTCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCACGCATTATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCTAAATCCAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGTTGCCTCATTCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATATCAAACAAGATTATTTGGAAAAACCCCTCAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.893

100

0.389