Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   LY257_RS01835 Genome accession   NZ_CP090367
Coordinates   362888..363661 (-) Length   257 a.a.
NCBI ID   WP_000404459.1    Uniprot ID   -
Organism   Helicobacter pylori strain CCUG 17875     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 357888..368661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY257_RS01800 (LY257_01785) - 357948..359108 (+) 1161 WP_054833728.1 HP1165 family MFS efflux transporter -
  LY257_RS01805 (LY257_01790) - 359115..360089 (-) 975 WP_000371792.1 NAD(P)-binding domain-containing protein -
  LY257_RS01810 (LY257_01795) ccoS 360117..360308 (-) 192 WP_001090949.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  LY257_RS01815 (LY257_01800) - 360442..361023 (+) 582 WP_001863786.1 DedA family protein -
  LY257_RS01820 (LY257_01805) - 361113..361607 (+) 495 WP_000516067.1 flavodoxin -
  LY257_RS01825 (LY257_01810) ybeY 361661..362083 (+) 423 WP_000889585.1 rRNA maturation RNase YbeY -
  LY257_RS01830 (LY257_01815) fic 362327..362860 (-) 534 WP_000549889.1 protein adenylyltransferase Fic -
  LY257_RS01835 (LY257_01820) proC 362888..363661 (-) 774 WP_000404459.1 pyrroline-5-carboxylate reductase Machinery gene
  LY257_RS01840 (LY257_01825) hopL 363676..367392 (-) 3717 WP_203028562.1 outer membrane protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28260.13 Da        Isoelectric Point: 9.1273

>NTDB_id=553716 LY257_RS01835 WP_000404459.1 362888..363661(-) (proC) [Helicobacter pylori strain CCUG 17875]
MEILQFIGYGNMAQAILEGAHEILSKRFILEITGRNPEKIAPFLQEKNIQARIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVSFEALSDAIDSLHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALNIIESFGNCVRVGNEELVD
ASVATNGSALAFLSLVASSLKDAGIREGLNARDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACQKSVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=553716 LY257_RS01835 WP_000404459.1 362888..363661(-) (proC) [Helicobacter pylori strain CCUG 17875]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATCTTAGAAGGCGCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATCACCGGGCGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCGCGCATCG
TTCCCTATAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTACAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCTAAAAGCGTTTTGAGCGCTTTAGCTGGCGTGAGTTTTGAAGCTTTAAGCGATGCGATAGATTCTTT
ACATTACTTAAAATGCATGCCCAACATTGCGAGCAAATTCGCCCTTTCTTCTACAGCGGTGTGTGAAAAATCGCCCATGC
CCTTAATAAGCCAAAAGGCTTTGAATATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAATTGGTAGAT
GCCAGCGTGGCGACAAACGGGAGTGCACTCGCATTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGCATTAGGGA
GGGCTTGAACGCTAGAGATTCTTTAGAGTTGGTGAAGATGAGTTTCAAGGGTTTTGCCAAGCTGTTAGAAAAAGAACGCC
CCGAGATGATTATAGAGCAAATTTGCACCCCTAAAGGTGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATCAAAGCATGCCAAAAGAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366