Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   J5Z55_RS23510 Genome accession   NZ_CP072473
Coordinates   4529893..4532250 (-) Length   785 a.a.
NCBI ID   WP_013059293.1    Uniprot ID   A0A1Q8V101
Organism   Priestia aryabhattai strain LAD     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4524893..4537250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5Z55_RS23490 (J5Z55_23490) alaS 4525202..4527835 (-) 2634 WP_013085088.1 alanine--tRNA ligase -
  J5Z55_RS23495 (J5Z55_23495) - 4528224..4529285 (-) 1062 WP_195781819.1 AI-2E family transporter -
  J5Z55_RS23500 (J5Z55_23500) - 4529400..4529534 (-) 135 WP_013059291.1 YrzQ family protein -
  J5Z55_RS23505 (J5Z55_23505) - 4529560..4529751 (-) 192 WP_013059292.1 hypothetical protein -
  J5Z55_RS23510 (J5Z55_23510) recD2 4529893..4532250 (-) 2358 WP_013059293.1 ATP-dependent RecD-like DNA helicase Machinery gene
  J5Z55_RS23515 (J5Z55_23515) - 4532275..4532934 (-) 660 WP_013085089.1 tetratricopeptide repeat protein -
  J5Z55_RS23520 (J5Z55_23520) mnmA 4533092..4534204 (-) 1113 WP_209150682.1 tRNA 2-thiouridine(34) synthase MnmA -
  J5Z55_RS23525 (J5Z55_23525) - 4534311..4535453 (-) 1143 WP_195781815.1 cysteine desulfurase family protein -
  J5Z55_RS23530 (J5Z55_23530) - 4535477..4535893 (-) 417 WP_013059297.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88832.25 Da        Isoelectric Point: 5.0673

>NTDB_id=553675 J5Z55_RS23510 WP_013059293.1 4529893..4532250(-) (recD2) [Priestia aryabhattai strain LAD]
MNEEQVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDEVYTFYGDFKEHPKFGL
QFHVEQFKKELPQSRQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPRLSADKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSEMDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGLVKAIQKIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSRQQGDRSFIRCQGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPASEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSVRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=553675 J5Z55_RS23510 WP_013059293.1 4529893..4532250(-) (recD2) [Priestia aryabhattai strain LAD]
ATGAACGAAGAACAAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCACGTCGATTGTAACGGTCTTTCATAA
CGAAGAAAACTTATATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTCGTCA
CAGGTTATTTTCCTAAGCTCAATGAAGATGAAGTATACACGTTTTACGGAGACTTCAAAGAGCATCCAAAGTTTGGTCTG
CAATTTCATGTTGAACAGTTTAAAAAAGAACTTCCGCAATCAAGGCAAGGGGTTGTTCAGTACCTATCAAGCGATTTATT
TCACGGAATCGGTAAAAAAACCGCTGAAAACATTGTGGATGCCCTAGGAGAACGCGCTATTTTTCGTATTTTGCAAAATG
AGTCTGTGCTAAAAGAGGTTCCGAGGCTTTCAGCCGACAAGGCAGAAGCTTTAGTCACTCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGTTGACAGACCTCGGGTTTGGACCGCAGCTTTCGATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTTGAAATTGTTCAAAATAATCCTTATCAGCTCGTAGAAGATATTCAAGGTATTGGTTTTAGCAGGGCCGATG
AACTTGGAAAGAGGCTTGGTATGGCAACCAATCATCCTGATCGTTTGCGTGCAGGTATTTTATACGTCATTGAGCAAGAA
TGCAATCAAATGGGACATGTATACGTCACGGCAGATCAGCTGTATGGAAAAACAGCAGAGCTTCTTCGAAAAAGCAGGCA
TGAGAATCTGTCTGAAATGGATCTTACAAGAGAAGTGGATGCGTTAAAAGCAGACAAAAAGCTTATCATTCAAGACGAAA
AAATTTATTTTCCTCCCCTTTTCTATGCTGAAAAAGGGCTGGTTAAAGCTATTCAAAAAATTATGGCTCAAACGCAGTAC
GAAGAGCAGTTTCCAGAATCAGAATTCTTATTGGCTCTAGGTGAACTAGAAGAGCGATTAGACGTGCAATATGCACCGTC
TCAGCGCAAGGGCATACAAACCGCTTTAATGTCTCCAATGCTTCTTTTAACAGGTGGACCGGGTACAGGGAAAACAACGG
TTATTAAAGGAATAGTCGAACTCTATGCAGAACTTCACGGATGTTCGTTAAATCCAGGGGATTATAAAAAAGATGAAGCT
TTTCCTGTTTTACTTGTGGCACCTACTGGACGCGCTGCTAAACGAATGAGCGAAGCGACGGGACTTCCGGCGGTTACGAT
TCACAGATTATTAAAATGGAACGGACAAGAAGGATTTGATCATAATGAGGAAAATCCAATTGACGGAAAATTACTGATTG
TGGATGAAGTATCAATGGTAGATTTGTGGCTTGCTCATCAGCTGTTTAAATCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGACGAAGACCAGCTTCCTTCAGTAGGTCCGGGACAGGTGTTAAAAGATTTACTGAGTTCAGAAGTAGTTCCTAC
CGTCCGTCTGACAGATGTATACCGGCAAGCGGAAGGATCGTCGATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGACTTATCGAGGCAGCAAGGAGATCGTTCCTTTATTCGTTGTCAAGGACAGCACATCACGAACGTCGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCCAAAGATATTCAAGTTCTAGCTCCTATGTATAAAGGTCCTGC
AGGGATTGATAAACTAAATGAAGTTCTTCAGGAATTATTTAACCCGGCTTCTGAGCAAAGAAGAGAGCTTAAGCACGGAG
ATATTACGTATCGAGTCGGAGATAAAGTGCTGCAGCTTGTAAATCAGCCGGATAGCAACGTATTTAACGGAGATATGGGA
GAAATCGTCTCGGTTTTCTTTGCCAAAGAAAATACGGAAAAACAGGATATGCTGGTTATTTCATATGAAGGAAATGAAGT
AACTTACACAAAGCAAGACTTTAATCAAATAACTCATGCATACTGCTGTTCCATTCATAAATCACAGGGAAGTGAATTTC
CCATTGTTGTGCTTCCAATTGTCAAAAGCTATTACCGGATGCTGCGACGCAATTTACTTTATACCGCCGTTACGCGAAGC
AAACAGTTTTTAATTTTATGCGGTGAAGACGAAGCGTTTCAGCTTGGAGTCAGCCGAAATGAAGACAGCGTTCGCCAAAC
GAATTTACAGCCCTTGCTTCGAGAAAGCTTGGATAACGACATAGAAGATCCCGAAATTCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(344-551)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q8V101

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.939

99.618

0.637