Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LXN03_RS02475 Genome accession   NZ_CP090348
Coordinates   541498..542223 (-) Length   241 a.a.
NCBI ID   WP_012613519.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA8329     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 536498..547223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN03_RS02450 (LXN03_02450) - 536971..537486 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  LXN03_RS02455 (LXN03_02455) rarD 538175..539071 (-) 897 WP_021204845.1 EamA family transporter RarD -
  LXN03_RS02460 (LXN03_02460) - 539274..540248 (-) 975 WP_021204844.1 serine/threonine protein kinase -
  LXN03_RS02465 (LXN03_02465) - 540310..541068 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  LXN03_RS02470 (LXN03_02470) - 541136..541456 (-) 321 WP_016263902.1 YfiM family lipoprotein -
  LXN03_RS02475 (LXN03_02475) comF 541498..542223 (-) 726 WP_012613519.1 ComF family protein Machinery gene
  LXN03_RS02480 (LXN03_02480) - 542362..542655 (-) 294 WP_003113255.1 hypothetical protein -
  LXN03_RS02485 (LXN03_02485) - 542709..543635 (-) 927 WP_021204842.1 LysR family transcriptional regulator -
  LXN03_RS02490 (LXN03_02490) - 543753..544511 (+) 759 WP_021204841.1 5-oxoprolinase subunit PxpA -
  LXN03_RS02495 (LXN03_02495) - 544588..544836 (+) 249 WP_016561527.1 acetyl-CoA carboxylase -
  LXN03_RS02500 (LXN03_02500) - 544847..546223 (+) 1377 WP_012613520.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  LXN03_RS02505 (LXN03_02505) - 546225..547103 (+) 879 WP_021204840.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27080.53 Da        Isoelectric Point: 10.8076

>NTDB_id=553618 LXN03_RS02475 WP_012613519.1 541498..542223(-) (comF) [Pseudomonas aeruginosa strain PA8329]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLHCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATTEHLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=553618 LXN03_RS02475 WP_012613519.1 541498..542223(-) (comF) [Pseudomonas aeruginosa strain PA8329]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCACTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCA
CCGAGCACCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.589

100

0.386