Detailed information NTG0553595

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: IUD23_RS09105
• Genome accession: NZ_CP090316
• Coordinates: 2020126..2021487 (+)
• Length: 453 a.a.
• NCBI ID: WP_234056300.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. morus strain Riv16
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2015126..2026487

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUD23_RS09095 (IUD23_09095)	-	2016875..2018785 (+)	1911	WP_038229844.1	DUF3857 domain-containing transglutaminase family protein	-
IUD23_RS09100 (IUD23_09100)	lolA	2019347..2019973 (+)	627	WP_004089126.1	outer membrane lipoprotein chaperone LolA	-
IUD23_RS09105 (IUD23_09105)	rarA	2020126..2021487 (+)	1362	WP_234056300.1	replication-associated recombination protein A	Machinery gene
IUD23_RS09110 (IUD23_09110)	crcB	2021648..2022049 (+)	402	WP_038229848.1	fluoride efflux transporter CrcB	-
IUD23_RS09115 (IUD23_09115)	-	2022723..2024219 (+)	1497	WP_038229850.1	ATP-binding protein	-
IUD23_RS09120 (IUD23_09120)	folK	2024344..2024859 (+)	516	WP_038229884.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-
IUD23_RS09125 (IUD23_09125)	-	2024870..2025607 (-)	738	WP_004083738.1	pteridine reductase	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 50601.87 Da
• Isoelectric Point: 7.1006

>NTDB_id=553595 IUD23_RS09105 WP_234056300.1 2020126..2021487(+) (rarA) [Xylella fastidiosa subsp. morus strain Riv16]
MTRQRFPTLQHDLLGVAPLLQPLAERMRPRTLHEMVGQKRLLAPDRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAHY
IDAEFRSVSAVLSGLPEVRQILAEAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIERGSIIFVGATTENPSFELNSAL
LSRCRVHVLEAVSSQDIVVALQRALQDTERGLGGQKIEVSQASLLEIAKAADGDVRRALTLLEIAAELAQDEQITADLLS
QVLADRSRRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRMLDGGCDPIYLARRLTRMAIEDIGLADPRAQSMALEAW
DIYERLGSPEGDLAFAQLVLYLASTAKSNAGYVAFNVAKEDIRQTGTQDVPLHLRNAPTRLMKSLGYGIEYQYDHDAENG
VALEQTCFPDALGERIYYQPVSRGLEIKLKEKLDWLRAARAQIQADKPQRPRA

Nucleotide

• Length: 1362 bp

>NTDB_id=553595 IUD23_RS09105 WP_234056300.1 2020126..2021487(+) (rarA) [Xylella fastidiosa subsp. morus strain Riv16]
GTGACACGACAGCGCTTTCCGACTCTTCAGCATGATTTGCTTGGTGTGGCTCCTCTCTTGCAGCCACTGGCCGAGCGCAT
GCGTCCTCGTACTCTTCATGAGATGGTAGGACAGAAGCGCTTGCTTGCCCCAGATCGTGCATTGCATCGTGCGGTTGCTT
CCGGGCATGTGCATTCCATGATTTTGTGGGGACCGCCAGGGTGCGGCAAGACGACATTGTCATTGCTGTTAGCGCATTAC
ATTGATGCAGAATTTCGGTCAGTCTCGGCTGTTCTTTCGGGGTTGCCGGAGGTGCGTCAGATCTTGGCTGAGGCTGCGCA
GCGTTTTTCTGAAGGACGCCGCACCGTCTTGTTCGTGGACGAAGTGCATCGTTTTAACAAGATGCAGCAGGATGCGTTTC
TGCCGCATATCGAGCGTGGTTCCATTATTTTCGTTGGTGCCACTACTGAGAATCCATCCTTCGAATTGAACTCGGCGTTA
CTGTCGCGTTGCCGTGTCCACGTGTTGGAGGCAGTGTCGTCACAGGATATTGTTGTGGCATTGCAGCGGGCGTTGCAGGA
TACGGAGCGGGGTTTGGGTGGGCAGAAGATTGAAGTGTCTCAAGCCTCTCTGTTGGAGATTGCCAAGGCTGCAGATGGTG
ACGTGCGTCGTGCGCTCACCTTGTTGGAGATTGCTGCTGAGCTTGCCCAGGATGAGCAGATAACCGCTGACTTGCTTTCG
CAAGTGCTTGCCGATCGTAGTCGGCGCTTCGACAAACGGGGGGAGCAGTTCTATGACCAGATTTCGGCCTTGCACAAGAG
TGTACGTAGTTCCAACCCGGATGCGGCATTGTATTGGTTGCTGCGTATGCTGGATGGTGGTTGTGATCCTATCTACTTGG
CCCGGCGCTTGACCCGCATGGCGATTGAGGATATCGGTTTGGCTGATCCGCGTGCACAGTCGATGGCTCTGGAGGCTTGG
GATATCTATGAGCGGTTGGGTAGCCCGGAGGGAGATCTGGCGTTCGCGCAGTTGGTGCTGTACTTGGCAAGTACAGCAAA
ATCGAATGCTGGCTATGTTGCGTTCAATGTGGCCAAGGAGGACATTCGCCAGACGGGTACTCAGGATGTTCCGCTACATC
TGCGCAATGCACCGACCAGACTCATGAAAAGTCTCGGTTACGGTATCGAGTATCAGTACGATCATGATGCTGAGAACGGT
GTTGCGCTGGAACAGACTTGTTTTCCCGATGCGCTGGGGGAGCGTATTTACTATCAACCGGTATCCCGCGGTCTGGAGAT
TAAGCTGAAGGAGAAGTTGGACTGGTTGCGTGCAGCACGTGCTCAGATTCAAGCGGATAAGCCGCAGCGGCCGCGTGCAT
AG

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (60-168)

• MgsA AAA+ ATPase C terminal (MgsA_C) (271-436)

• AAA C-terminal domain (AAA_assoc_2) (194-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.48	93.377	0.369