Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   - Genome accession   NC_015600
Coordinates   48298..48342 (+) Length   15 a.a.
NCBI ID   - Uniprot ID   -
Organism   Streptococcus pasteurianus ATCC 43144     
Function   activate transcription of comX; activate transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 43298..53342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS00270 (SGPB_0034) - 43523..43972 (+) 450 WP_003062811.1 DUF523 domain-containing protein -
  SGPB_RS00275 (SGPB_0035) purE 43972..44460 (+) 489 WP_003062813.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  SGPB_RS00280 (SGPB_0036) purK 44447..45538 (+) 1092 WP_003062815.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  SGPB_RS00285 (SGPB_0037) - 45558..45782 (+) 225 WP_003062817.1 hypothetical protein -
  SGPB_RS00290 (SGPB_0038) purB 45872..47170 (+) 1299 WP_003062820.1 adenylosuccinate lyase -
  SGPB_RS00295 (SGPB_0039) comR 47322..48221 (+) 900 WP_003062822.1 helix-turn-helix domain-containing protein Regulator
  - comS 48298..48342 (+) 45 - - Regulator
  SGPB_RS00300 (SGPB_0040) - 49265..49696 (+) 432 WP_013851395.1 low molecular weight protein-tyrosine-phosphatase -
  SGPB_RS00305 (SGPB_0041) - 49716..50096 (+) 381 WP_013851396.1 MORN repeat-containing protein -
  SGPB_RS00310 (SGPB_0042) - 50093..51886 (+) 1794 WP_003062827.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 15 a.a.        Molecular weight: 1736.10 Da        Isoelectric Point: 5.5500

>NTDB_id=553 48298..48342(+) (comS) [Streptococcus pasteurianus ATCC 43144]
MLNIFSIVLTGWWGV

Nucleotide


Download         Length: 45 bp        

>NTDB_id=553 48298..48342(+) (comS) [Streptococcus pasteurianus ATCC 43144]
ATGCTAAATATTTTCTCAATTGTCCTAACTGGTTGGTGGGGGGTA

XIP

This gene is known to encode the precursor of σX inducing peptide (XIP), which involves in competence development. The mature XIP sequence is displayed as below:

LTGWWGV


Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus infantarius subsp. infantarius ATCC BAA-102

53.333

100

0.533

Multiple sequence alignment