Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   J7T60_RS01060 Genome accession   NZ_CP072436
Coordinates   184569..185507 (+) Length   312 a.a.
NCBI ID   WP_372433477.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24735     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 179569..190507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T60_RS01040 (J7T60_01035) - 181236..182248 (+) 1013 Protein_151 peptide ABC transporter substrate-binding protein -
  J7T60_RS01045 (J7T60_01040) - 182250..182468 (+) 219 Protein_152 ABC transporter permease subunit -
  J7T60_RS01050 (J7T60_01045) - 182479..183512 (+) 1034 Protein_153 ABC transporter permease -
  J7T60_RS01055 (J7T60_01050) - 183526..184549 (+) 1024 Protein_154 ABC transporter ATP-binding protein -
  J7T60_RS01060 (J7T60_01055) amiF 184569..185507 (+) 939 WP_372433477.1 ABC transporter ATP-binding protein Regulator
  J7T60_RS01065 (J7T60_01060) - 185729..185983 (+) 255 WP_011226818.1 hypothetical protein -
  J7T60_RS01070 (J7T60_01065) hslO 186064..186930 (+) 867 WP_002949275.1 Hsp33 family molecular chaperone HslO -
  J7T60_RS01075 (J7T60_01070) dusB 186923..187900 (+) 978 WP_011680674.1 tRNA dihydrouridine synthase DusB -
  J7T60_RS01080 (J7T60_01075) - 188103..188966 (+) 864 WP_011226821.1 Rgg/GadR/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35225.86 Da        Isoelectric Point: 6.4461

>NTDB_id=552963 J7T60_RS01060 WP_372433477.1 184569..185507(+) (amiF) [Streptococcus thermophilus strain S24735]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGESGSGKTTIGRSVLKLSDIDSGTVTFSGNGISSL
KGKDLHDFRKTDQMIFQDPQSSLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIDLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNHHFIVADKPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGENRQMYEIRPGHFVYATEAEAKNYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=552963 J7T60_RS01060 WP_372433477.1 184569..185507(+) (amiF) [Streptococcus thermophilus strain S24735]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATCTGTTTTAAAACTTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGGGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGACAGATCAGATGATCTTTCAAGATCCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCTCATGAGTTTTCTGGTGGTCAACGTCAA
AGAATTGGTATTGCGCGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACAAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTTCTTGAAGTGGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGTCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCGACCAGGGCATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.115

97.756

0.519
  amiF Streptococcus thermophilus LMG 18311

52.787

97.756

0.516
  amiF Streptococcus salivarius strain HSISS4

52.459

97.756

0.513