Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   J7U23_RS01075 Genome accession   NZ_CP072435
Coordinates   184735..185673 (+) Length   312 a.a.
NCBI ID   WP_372433477.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24736     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 179735..190673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U23_RS01055 (J7U23_01040) - 181400..182413 (+) 1014 Protein_154 peptide ABC transporter substrate-binding protein -
  J7U23_RS01060 (J7U23_01045) - 182415..182633 (+) 219 Protein_155 ABC transporter permease subunit -
  J7U23_RS01065 (J7U23_01050) - 182644..183678 (+) 1035 Protein_156 ABC transporter permease -
  J7U23_RS01070 (J7U23_01055) - 183692..184715 (+) 1024 Protein_157 ABC transporter ATP-binding protein -
  J7U23_RS01075 (J7U23_01060) amiF 184735..185673 (+) 939 WP_372433477.1 ABC transporter ATP-binding protein Regulator
  J7U23_RS01080 (J7U23_01065) - 185895..186149 (+) 255 WP_011226818.1 hypothetical protein -
  J7U23_RS01085 (J7U23_01070) hslO 186230..187096 (+) 867 WP_002949275.1 Hsp33 family molecular chaperone HslO -
  J7U23_RS01090 (J7U23_01075) dusB 187089..188066 (+) 978 WP_372589937.1 tRNA dihydrouridine synthase DusB -
  J7U23_RS01095 (J7U23_01080) - 188269..189132 (+) 864 WP_011226821.1 Rgg/GadR/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35225.86 Da        Isoelectric Point: 6.4461

>NTDB_id=552901 J7U23_RS01075 WP_372433477.1 184735..185673(+) (amiF) [Streptococcus thermophilus strain S24736]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGESGSGKTTIGRSVLKLSDIDSGTVTFSGNGISSL
KGKDLHDFRKTDQMIFQDPQSSLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIDLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNHHFIVADKPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGENRQMYEIRPGHFVYATEAEAKNYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=552901 J7U23_RS01075 WP_372433477.1 184735..185673(+) (amiF) [Streptococcus thermophilus strain S24736]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATCTGTTTTAAAACTTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGGGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGACAGATCAGATGATCTTTCAAGATCCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCTCATGAGTTTTCTGGTGGTCAACGTCAA
AGAATTGGTATTGCGCGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACAAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTTCTTGAAGTGGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGTCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCGACCAGGGCATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.115

97.756

0.519
  amiF Streptococcus thermophilus LMG 18311

52.787

97.756

0.516
  amiF Streptococcus salivarius strain HSISS4

52.459

97.756

0.513