Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   THECO_RS09560 Genome accession   NC_019897
Coordinates   2046068..2047771 (-) Length   567 a.a.
NCBI ID   WP_015254832.1    Uniprot ID   A0A3E0QXY9
Organism   Thermobacillus composti KWC4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2041068..2052771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  THECO_RS09535 (Theco_1959) - 2042065..2042379 (+) 315 WP_015254827.1 DUF2627 domain-containing protein -
  THECO_RS09540 (Theco_1960) - 2042429..2042935 (-) 507 WP_015254828.1 hypothetical protein -
  THECO_RS09545 (Theco_1961) - 2043021..2043266 (-) 246 Protein_1937 chromosome condensation regulator -
  THECO_RS09550 (Theco_1962) spo0A 2043436..2044245 (-) 810 WP_015254830.1 sporulation transcription factor Spo0A -
  THECO_RS09555 (Theco_1963) spoIVB 2044470..2045795 (-) 1326 WP_015254831.1 SpoIVB peptidase -
  THECO_RS09560 (Theco_1964) recN 2046068..2047771 (-) 1704 WP_015254832.1 DNA repair protein RecN Machinery gene
  THECO_RS09565 (Theco_1965) ahrC 2047805..2048269 (-) 465 WP_015254833.1 transcriptional regulator AhrC/ArgR -
  THECO_RS09570 (Theco_1966) - 2048287..2048784 (-) 498 WP_015254834.1 hypothetical protein -
  THECO_RS09575 (Theco_1967) - 2049218..2050051 (-) 834 WP_015254835.1 TlyA family RNA methyltransferase -
  THECO_RS09580 (Theco_1968) dxs 2050077..2051978 (-) 1902 WP_015254836.1 1-deoxy-D-xylulose-5-phosphate synthase -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 63974.73 Da        Isoelectric Point: 5.1938

>NTDB_id=55290 THECO_RS09560 WP_015254832.1 2046068..2047771(-) (recN) [Thermobacillus composti KWC4]
MLRELSIRNLAVIEHVSVSFAEGFHVLTGETGAGKSILIDALSLVIGGRGAADIVRYGCEKAEIEALFDPPAGHPVREVL
ESLGIEAEPDEPIVVRRELSVQGKSVSRVNGRIVNLSMLREIGECLVNIHGQHEHQSLLKTERHLEWLDAYAGGKLADLK
RDYQEIYRRYTETRNKLRELEDASRQNMQMLDLYKFQLAEIDDARLKPGEDEALQDERRRLAHAERIMQNASEAYELIYG
NAGLDALARAISRLEDIRKYDAPAIEPLLEQLQSAYYQAEDAAYQLRDYRERIESDPERLTEIEDRLDLIGGLKRKYGER
IEDILEYRAKIADAIDKMENRDEHLERLREEERKLREQAQRLALGLSEQRRLAADRLAKEIESELKELQMERTTFKVQLD
QQPGEDGAPKLAPHGIDEAVFLFSANPGEPPKPLAKIASGGEMSRIMLALKTVFAAIDGVPVLVFDEVDTGVSGRAAQAI
AEKMSKLSRRCQVFAITHLPQVACMADHHYGIRKQTLGERTSTTVEPLQGIGRVEELARMLGGVEVTDMTRHHAREMLDL
AERKKGA

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=55290 THECO_RS09560 WP_015254832.1 2046068..2047771(-) (recN) [Thermobacillus composti KWC4]
ATGCTTCGCGAGCTGTCGATACGCAATCTGGCTGTCATCGAACACGTATCCGTATCTTTCGCGGAGGGGTTCCATGTGCT
GACCGGCGAGACCGGCGCGGGCAAGTCGATTCTGATCGACGCGCTCAGCCTGGTCATCGGCGGCCGCGGCGCGGCGGACA
TCGTGCGCTACGGATGCGAGAAGGCCGAGATCGAAGCGCTGTTCGACCCGCCTGCCGGCCATCCGGTGCGGGAAGTGCTG
GAATCGCTCGGCATCGAAGCGGAACCGGATGAGCCGATTGTCGTGCGGCGCGAATTGTCGGTCCAGGGCAAGAGCGTAAG
CCGCGTGAACGGCCGGATCGTCAATCTGTCCATGCTCAGGGAGATCGGCGAATGTCTCGTCAACATTCACGGTCAGCACG
AGCATCAGTCGCTGCTCAAGACGGAGCGGCACCTCGAGTGGCTCGACGCCTATGCGGGCGGGAAGCTGGCCGACCTGAAG
CGGGATTATCAGGAGATCTACCGGCGATATACGGAGACGCGGAACAAGCTGCGGGAACTCGAAGACGCTTCGCGGCAAAA
CATGCAGATGCTCGATCTGTACAAGTTCCAGCTCGCGGAGATCGACGACGCGCGGCTAAAGCCCGGCGAGGACGAGGCGC
TGCAGGATGAGCGCAGGCGGCTGGCGCATGCCGAGCGCATCATGCAGAACGCATCCGAGGCGTATGAGCTCATTTACGGC
AATGCCGGGCTGGATGCGCTGGCCAGGGCGATTTCGCGGCTCGAGGATATCCGCAAGTACGACGCCCCGGCCATCGAGCC
GCTGCTGGAGCAGCTGCAGTCGGCTTATTATCAGGCGGAAGACGCGGCGTACCAGCTCCGCGACTATCGCGAACGCATCG
AGTCCGATCCCGAGCGGCTGACCGAGATCGAAGACCGGCTTGATCTGATCGGGGGGCTCAAGCGCAAATACGGCGAGCGC
ATCGAAGATATCCTCGAATACCGGGCGAAGATCGCCGACGCCATCGACAAGATGGAGAACCGGGACGAGCATCTTGAGCG
GCTGCGCGAGGAAGAGCGCAAGCTGCGCGAGCAGGCGCAGCGCCTGGCGCTCGGGCTTTCGGAGCAGCGCCGGCTTGCGG
CGGACCGGCTGGCGAAGGAGATCGAAAGCGAGCTCAAGGAGCTGCAGATGGAGCGCACGACGTTCAAGGTGCAGCTCGAT
CAGCAGCCGGGCGAGGATGGCGCGCCGAAGCTGGCGCCGCACGGAATCGACGAGGCAGTCTTCCTGTTCTCCGCGAATCC
GGGCGAACCGCCGAAGCCGCTCGCGAAGATCGCTTCCGGAGGCGAAATGTCGCGCATCATGCTGGCGCTGAAGACGGTTT
TCGCCGCGATCGACGGGGTGCCGGTTCTCGTGTTCGACGAAGTGGACACGGGCGTCAGCGGACGTGCCGCGCAGGCTATC
GCGGAGAAGATGTCGAAGCTGTCCCGACGCTGCCAGGTGTTCGCGATCACGCACCTGCCGCAGGTGGCCTGCATGGCGGA
CCATCATTACGGCATTCGCAAGCAGACGCTCGGCGAGCGCACGTCCACGACGGTCGAACCGCTGCAAGGCATCGGCCGGG
TCGAGGAGCTGGCACGCATGCTCGGAGGCGTGGAAGTGACGGATATGACGCGCCATCACGCCCGGGAGATGCTGGATCTG
GCCGAACGGAAGAAGGGCGCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E0QXY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.826

100

0.485

Multiple sequence alignment