Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LVE67_RS05045 Genome accession   NZ_CP089849
Coordinates   1086706..1087131 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PA0523     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1081706..1092131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVE67_RS05025 (LVE67_05025) ileS 1081863..1084694 (+) 2832 WP_003094730.1 isoleucine--tRNA ligase -
  LVE67_RS05030 (LVE67_05030) lspA 1084687..1085196 (+) 510 WP_003110420.1 signal peptidase II -
  LVE67_RS05035 (LVE67_05035) fkpB 1085189..1085629 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  LVE67_RS05040 (LVE67_05040) ispH 1085715..1086659 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LVE67_RS05045 (LVE67_05045) comF 1086706..1087131 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  LVE67_RS05050 (LVE67_05050) pilY2 1087128..1087475 (-) 348 WP_003094713.1 type 4a fimbrial biogenesis protein PilY2 -
  LVE67_RS05055 (LVE67_05055) pilY1 1087477..1090962 (-) 3486 WP_003110421.1 type 4a pilus biogenesis protein PilY1 -
  LVE67_RS05060 (LVE67_05060) pilX 1090974..1091561 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=552470 LVE67_RS05045 WP_003094721.1 1086706..1087131(-) (comF) [Pseudomonas aeruginosa strain PA0523]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=552470 LVE67_RS05045 WP_003094721.1 1086706..1087131(-) (comF) [Pseudomonas aeruginosa strain PA0523]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383