Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LRS74_RS31730 Genome accession   NZ_CP089746
Coordinates   7693563..7694462 (+) Length   299 a.a.
NCBI ID   WP_277745023.1    Uniprot ID   -
Organism   Streptomyces sp. LX-29     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 7688563..7699462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRS74_RS31715 (LRS74_31715) - 7689799..7691388 (+) 1590 WP_277744236.1 ABC transporter substrate-binding protein -
  LRS74_RS31720 (LRS74_31720) - 7691427..7692392 (+) 966 WP_277745022.1 ABC transporter permease -
  LRS74_RS31725 (LRS74_31725) - 7692385..7693404 (+) 1020 WP_277744237.1 ABC transporter permease -
  LRS74_RS31730 (LRS74_31730) amiE 7693563..7694462 (+) 900 WP_277745023.1 ABC transporter ATP-binding protein Regulator
  LRS74_RS31735 (LRS74_31735) - 7694455..7695135 (+) 681 WP_277744238.1 ATP-binding cassette domain-containing protein -
  LRS74_RS31740 (LRS74_31740) - 7695341..7696018 (-) 678 WP_277744239.1 UdgX family uracil-DNA binding protein -
  LRS74_RS31745 (LRS74_31745) - 7696032..7696595 (-) 564 WP_277744240.1 hemerythrin domain-containing protein -
  LRS74_RS31750 (LRS74_31750) ctaD 7697017..7698747 (+) 1731 WP_277744241.1 cytochrome c oxidase subunit I -
  LRS74_RS31755 (LRS74_31755) - 7698744..7699130 (+) 387 WP_277744242.1 hypothetical protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 30979.33 Da        Isoelectric Point: 6.4226

>NTDB_id=552453 LRS74_RS31730 WP_277745023.1 7693563..7694462(+) (amiE) [Streptomyces sp. LX-29]
MRGGRHVAAVSGVSFDLAAGECLALVGESGCGKSVLASALLGLLPGNAQTAGSALLDGIDLLAADERTLARTVRGRRVGL
VPQSPAAHLTPVRTVRAHLEETVRELTGTARAELRAAAEAAAARAAFPADHLDRYPHQLSGGLAQRAATALALVGDAPLL
LADEPTTGLDRDLVEHTVDELRRHTDDGRALLIITHDLAAAERIADRVAVMYAGRIVEIADAAAFFGTPGPRHPYARGLL
AALPERDFTPIPGMPPELGALPAGCAFAARCDRATEVCGTLPAPRDGVACHHAMEAARA

Nucleotide


Download         Length: 900 bp        

>NTDB_id=552453 LRS74_RS31730 WP_277745023.1 7693563..7694462(+) (amiE) [Streptomyces sp. LX-29]
ATGCGCGGCGGCCGGCATGTGGCGGCCGTGAGCGGGGTGAGCTTCGACCTGGCGGCGGGGGAGTGCCTGGCGCTGGTGGG
CGAGAGCGGCTGCGGCAAGTCCGTGCTCGCCTCGGCGCTGCTCGGGCTGCTGCCCGGCAACGCCCAGACGGCGGGCAGCG
CCCTGCTGGACGGGATCGACCTGCTCGCCGCCGACGAGCGCACCCTGGCCCGCACCGTGCGCGGCCGCCGGGTGGGCCTG
GTACCGCAGAGCCCGGCCGCCCACCTCACTCCGGTGCGTACCGTGCGCGCCCACCTGGAGGAGACCGTACGGGAGCTGAC
CGGCACCGCGCGGGCGGAGCTGCGGGCCGCCGCCGAGGCGGCCGCCGCGCGGGCGGCGTTCCCCGCCGACCACCTGGACC
GCTATCCGCACCAGCTCTCCGGCGGCCTGGCCCAGCGCGCCGCGACCGCGCTCGCCCTGGTCGGCGACGCGCCGCTGCTG
CTCGCCGACGAGCCGACCACGGGGCTCGACCGCGACCTGGTGGAGCACACCGTCGACGAGCTGCGCCGGCACACCGACGA
CGGACGCGCGCTGCTGATCATCACCCATGACCTGGCGGCGGCGGAGCGGATCGCGGACCGGGTGGCGGTCATGTACGCGG
GCCGCATCGTCGAGATCGCCGACGCGGCGGCCTTCTTCGGCACGCCCGGCCCCCGCCACCCGTACGCGCGCGGGCTGCTC
GCCGCGCTCCCCGAACGGGACTTCACGCCGATCCCCGGCATGCCGCCGGAGCTCGGCGCGCTCCCCGCCGGCTGCGCCTT
CGCCGCCCGCTGCGACCGGGCCACCGAGGTCTGCGGCACGCTCCCGGCGCCGCGCGACGGCGTCGCCTGCCACCACGCCA
TGGAGGCCGCCCGTGCTTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(217-278)

ABC transporter (ABC_tran)

(11-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

36.7

99.331

0.365
  amiE Streptococcus thermophilus LMG 18311

36.7

99.331

0.365
  amiE Streptococcus thermophilus LMD-9

36.7

99.331

0.365