Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   LRS74_RS18165 Genome accession   NZ_CP089746
Coordinates   4209618..4211357 (+) Length   579 a.a.
NCBI ID   WP_277741977.1    Uniprot ID   -
Organism   Streptomyces sp. LX-29     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4204618..4216357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRS74_RS18140 (LRS74_18145) - 4205232..4205519 (-) 288 WP_144386939.1 DUF1416 domain-containing protein -
  LRS74_RS18145 (LRS74_18150) - 4205605..4206444 (-) 840 WP_277741974.1 sulfurtransferase -
  LRS74_RS18150 (LRS74_18155) - 4207126..4207938 (-) 813 WP_277741975.1 DUF2993 domain-containing protein -
  LRS74_RS18155 (LRS74_18160) - 4207985..4209181 (-) 1197 WP_277741976.1 hypothetical protein -
  LRS74_RS18160 (LRS74_18165) - 4209191..4209451 (-) 261 WP_277744810.1 MoaD/ThiS family protein -
  LRS74_RS18165 (LRS74_18170) rcrP 4209618..4211357 (+) 1740 WP_277741977.1 ABC transporter ATP-binding protein Regulator
  LRS74_RS18170 (LRS74_18175) rcrQ 4211354..4213333 (+) 1980 WP_277741978.1 ABC transporter ATP-binding protein Regulator
  LRS74_RS18175 (LRS74_18180) - 4213387..4215201 (-) 1815 WP_277741979.1 glycoside hydrolase family 15 protein -
  LRS74_RS18180 (LRS74_18185) - 4215367..4216305 (-) 939 WP_277741980.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 62939.65 Da        Isoelectric Point: 7.7854

>NTDB_id=552423 LRS74_RS18165 WP_277741977.1 4209618..4211357(+) (rcrP) [Streptomyces sp. LX-29]
MLLRLIRAHLKPYIRPITLIVFLQLVATLATLYLPTLNADIIDDGVVKGDTGYILRLGGVMIGVTLVQVVCSIGGVYYGA
RTSMALGRDIRAAVFDRVQSFSARELGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVAAPIMCVGGIALALQQDVPLSGL
LLLIVPVLGLITGVVLLRMRPLFRGVQSRIDTVNRVLREQITGIRVIRAFVRDDHERRRFTVANEGLLDVSLRAGRLMAL
MFPAVMLVVNLSSVAVVWFGGHRIDDGEMQIGALTAFLAYLMQILMSVMMATFMFMMVPRAEVCAERVQEVLTTESSVAP
PRVPVTVPAARRRGLLELTGVEFRYPGAEEPVLRDVSLIARPGETTAVIGSTGSGKSTLLGLVPRLFDATAGRVRVDGVD
VTELDPVVLTETVGLVPQKPYLFSGTVASNLRYGNPDATDEELWRALEVAQAREFVEQLPEGLAAPIAQGGGNVSGGQRQ
RLAIARALVRRPAIYLFDDSFSALDYATDARLRLALAAETSEATVVIVAQRVSTIRNADRIVVLDEGRVVGTGTHPELME
SNPTYREIVLSQLTEREAA

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=552423 LRS74_RS18165 WP_277741977.1 4209618..4211357(+) (rcrP) [Streptomyces sp. LX-29]
GTGCTGCTCCGACTCATACGGGCCCATCTCAAGCCCTACATCCGTCCCATCACACTTATCGTCTTTTTACAGCTCGTCGC
GACGCTCGCCACGCTGTATCTGCCGACGCTGAACGCGGACATCATCGACGACGGCGTGGTCAAGGGGGATACCGGATACA
TCCTGCGGCTCGGTGGCGTCATGATCGGCGTGACGCTGGTGCAGGTGGTGTGCTCCATCGGCGGGGTCTACTACGGCGCG
CGCACCTCCATGGCGCTCGGCCGTGACATCCGGGCGGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGCGAACTGGG
TCGCTTCGGGGCGCCCTCGTTGATCACCCGCACCACCAACGACGTGCAGCAGGTCCAGATGCTGGTGCTGATGGCGTTCA
CGCTGATGGTCGCGGCGCCGATCATGTGCGTGGGCGGCATCGCCCTGGCGCTCCAGCAGGACGTGCCGCTCTCCGGGCTG
CTGCTGCTGATCGTGCCGGTGCTGGGCCTCATCACCGGGGTCGTCCTGCTCCGGATGCGGCCGCTGTTCCGCGGTGTCCA
GTCCCGGATCGACACCGTCAACCGGGTGCTGCGCGAGCAGATCACCGGCATCCGGGTGATCCGCGCCTTCGTGCGGGACG
ACCACGAGCGCCGGCGCTTCACGGTGGCCAACGAGGGCCTGCTGGACGTCTCGCTGCGGGCCGGCCGGCTGATGGCGCTG
ATGTTCCCGGCCGTGATGCTGGTGGTGAACCTCTCCAGCGTGGCCGTGGTCTGGTTCGGCGGGCACCGCATCGACGACGG
CGAGATGCAGATCGGTGCGCTGACCGCGTTCCTGGCCTATCTGATGCAGATCCTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCCCGCGCGGAGGTGTGCGCGGAACGCGTCCAGGAGGTGCTCACCACCGAGAGCAGCGTGGCACCC
CCGCGCGTCCCGGTGACCGTCCCGGCCGCGCGTCGCCGCGGGCTGCTGGAGCTGACCGGGGTGGAGTTCCGCTACCCGGG
CGCCGAGGAGCCGGTGCTGCGGGACGTCTCGCTGATCGCCCGGCCGGGTGAGACCACGGCCGTCATCGGCTCCACCGGCA
GCGGCAAGTCCACGTTGCTGGGGCTGGTGCCGCGGCTGTTCGACGCCACCGCCGGCCGGGTGCGGGTGGACGGCGTGGAC
GTCACCGAGCTGGACCCGGTGGTGCTCACCGAGACCGTCGGCCTGGTCCCGCAGAAGCCGTACCTGTTCAGCGGGACGGT
CGCCTCGAACCTGCGCTACGGGAACCCCGACGCGACGGACGAGGAGCTGTGGCGGGCGCTGGAGGTGGCCCAGGCGCGGG
AGTTCGTCGAGCAACTGCCGGAGGGGCTCGCGGCCCCGATCGCCCAGGGCGGCGGCAATGTCTCCGGCGGTCAGCGGCAG
CGGCTGGCGATCGCCCGGGCGCTGGTGCGCCGACCGGCGATCTACCTCTTCGACGACTCCTTCTCGGCGCTCGACTACGC
CACCGACGCCCGGCTGCGGCTGGCGCTGGCCGCGGAGACGAGCGAGGCCACGGTCGTCATCGTCGCCCAGCGGGTCTCCA
CCATCCGCAACGCGGACCGCATCGTGGTGCTGGACGAGGGCCGCGTCGTCGGCACCGGCACCCACCCCGAGTTGATGGAG
TCCAACCCCACCTACCGGGAGATCGTGCTCTCCCAGCTCACCGAGCGGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(353-500)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.267

89.983

0.371