Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LRS74_RS05520 Genome accession   NZ_CP089746
Coordinates   1261234..1262586 (-) Length   450 a.a.
NCBI ID   WP_277739922.1    Uniprot ID   -
Organism   Streptomyces sp. LX-29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1256234..1267586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRS74_RS05495 (LRS74_05485) - 1256269..1256601 (-) 333 WP_277739918.1 DUF6167 family protein -
  LRS74_RS05500 (LRS74_05490) - 1256610..1257068 (-) 459 WP_277739919.1 DUF948 domain-containing protein -
  LRS74_RS05505 (LRS74_05495) - 1257219..1259396 (+) 2178 WP_277739920.1 AAA family ATPase -
  LRS74_RS05510 (LRS74_05500) rpsD 1259384..1259995 (-) 612 WP_144382450.1 30S ribosomal protein S4 -
  LRS74_RS05515 (LRS74_05505) - 1260189..1260932 (+) 744 WP_277739921.1 DUF2470 domain-containing protein -
  LRS74_RS05520 (LRS74_05510) rarA 1261234..1262586 (-) 1353 WP_277739922.1 replication-associated recombination protein A Machinery gene
  LRS74_RS05525 (LRS74_05515) - 1262683..1263339 (-) 657 WP_277739923.1 vitamin K epoxide reductase family protein -
  LRS74_RS05530 (LRS74_05520) hisS 1263672..1264934 (-) 1263 WP_277739924.1 histidine--tRNA ligase -
  LRS74_RS05535 (LRS74_05525) - 1264946..1265662 (-) 717 WP_277739925.1 MBL fold metallo-hydrolase -
  LRS74_RS05540 (LRS74_05530) - 1265839..1266630 (+) 792 WP_277739926.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 47884.34 Da        Isoelectric Point: 6.5850

>NTDB_id=552392 LRS74_RS05520 WP_277739922.1 1261234..1262586(-) (rarA) [Streptomyces sp. LX-29]
MEPDLFTAAAEERQEKDPASSPLAVRMRPRTLDEVVGQGHLLRPGSPLRRLVGEGSGGPAGPSSVILWGPPGIGKTTLAY
VVSQATQKRFVELSAITAGVKEVRAVIDGARRSTGAYGRETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDEDLRGLLRRALTEERGLGGAVTLPEDAEAHLLRIAGGDARRALTALEAGAGSAIAKGESE
ITLSTLEESVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTAL
PTAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNSATTAIGAALQDVRAGLAGPVPPHLRDGHYQGAKKLGHAQGYVY
PHDLPGGIAAQQYAPDAIHGKRYYAPTRYGAEARYADIVERVRLRLRGTE

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=552392 LRS74_RS05520 WP_277739922.1 1261234..1262586(-) (rarA) [Streptomyces sp. LX-29]
GTGGAGCCAGACCTGTTCACCGCCGCCGCAGAGGAACGCCAGGAGAAGGACCCGGCCAGTAGTCCGTTGGCGGTCCGGAT
GCGCCCGCGCACCCTCGACGAGGTGGTGGGCCAGGGCCATCTGCTGCGCCCCGGCTCCCCACTGCGCCGGCTGGTGGGAG
AGGGCAGCGGCGGCCCGGCCGGGCCGTCCTCGGTGATCCTGTGGGGGCCGCCCGGCATCGGCAAGACCACGCTGGCCTAT
GTGGTCAGCCAGGCCACCCAGAAGCGCTTCGTGGAGCTCTCCGCGATCACCGCCGGGGTCAAGGAGGTGCGGGCCGTCAT
CGACGGTGCCCGCCGCTCCACGGGTGCCTACGGCCGGGAGACGGTGCTCTTCCTGGACGAGATCCACCGTTTCAGCAAGG
CCCAGCAGGACTCGCTGCTGCCAGCCGTGGAGAACCGCTGGGTCACGCTCATCGCGGCCACCACGGAGAACCCGTACTTC
TCGGTCATCTCCCCGCTGCTGTCCCGCTCGCTGCTGCTCACTCTGGAGCCGCTGACCGACGAGGACCTGCGCGGGCTGCT
GCGGCGCGCGCTCACCGAGGAGCGCGGGCTCGGCGGAGCGGTCACCCTCCCCGAGGACGCGGAGGCGCACCTGCTGCGGA
TCGCCGGCGGCGACGCCCGACGGGCGCTGACCGCCCTGGAGGCCGGCGCGGGCTCGGCGATAGCCAAGGGCGAGTCCGAG
ATCACGCTGTCCACGCTGGAGGAGTCGGTCGACCGGGCCGCGGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGT
GGCCAGCGCCCTCATCAAGTCCATCCGCGGCTCCGACGTGGACGCGGCGCTGCACTACCTCGCCCGGATGATCGAGGCGG
GGGAGGACCCGCGGTTCATCGCGCGGCGGCTGATGATCTCCGCCAGCGAGGACATCGGGCTCGCCGACCCCACCGCCCTG
CCCACGGCGGTGGCCGCCGCCCAGGCGGTCGCGATGATCGGCTTCCCGGAGGCGGCGCTCACCCTCAGCCACGCCACCAT
CGCGCTGGCGCTGGCCCCCAAGTCCAACTCCGCCACCACCGCCATCGGCGCGGCGCTCCAGGACGTCCGCGCGGGCCTCG
CCGGTCCGGTGCCGCCCCATCTGCGCGACGGTCACTACCAGGGCGCCAAGAAGCTGGGCCACGCCCAGGGCTATGTCTAC
CCCCATGACCTCCCGGGCGGCATCGCGGCCCAGCAGTACGCGCCCGACGCCATCCACGGCAAGCGCTACTACGCGCCGAC
CCGCTACGGCGCGGAGGCTCGCTACGCGGACATCGTGGAGCGGGTGCGGCTGCGCCTGCGCGGCACGGAGTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-442)

AAA C-terminal domain (AAA_assoc_2)

(200-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

46.618

92

0.429