Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | HP1CH_RS05275 | Genome accession | NZ_AP013355 |
| Coordinates | 1088507..1089682 (+) | Length | 391 a.a. |
| NCBI ID | WP_000060246.1 | Uniprot ID | O25670 |
| Organism | Helicobacter pylori 26695-1CH | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1083507..1094682
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HP1CH_RS05250 | - | 1083762..1084658 (+) | 897 | WP_000697557.1 | OriC activity response regulator | - |
| HP1CH_RS05255 | - | 1084914..1085750 (+) | 837 | WP_000556224.1 | 5'-3' exonuclease | - |
| HP1CH_RS05260 | - | 1085845..1087095 (-) | 1251 | WP_001199552.1 | hypothetical protein | - |
| HP1CH_RS05265 | - | 1087263..1088129 (+) | 867 | WP_000045822.1 | DnaJ family protein | - |
| HP1CH_RS05270 | - | 1088139..1088510 (+) | 372 | WP_000332994.1 | heat shock protein transcriptional repressor HspR | - |
| HP1CH_RS05275 | rarA | 1088507..1089682 (+) | 1176 | WP_000060246.1 | replication-associated recombination protein A | Machinery gene |
| HP1CH_RS05280 | fur | 1089842..1090294 (+) | 453 | WP_000824996.1 | ferric iron uptake transcriptional regulator | - |
| HP1CH_RS05285 | - | 1090314..1090811 (-) | 498 | WP_001241701.1 | DUF2147 domain-containing protein | - |
| HP1CH_RS05290 | - | 1090808..1091344 (-) | 537 | WP_000964040.1 | YhcH/YjgK/YiaL family protein | - |
| HP1CH_RS05295 | fliY | 1091373..1092236 (-) | 864 | WP_001150629.1 | flagellar motor switch protein FliY | - |
| HP1CH_RS05300 | fliM | 1092240..1093304 (-) | 1065 | WP_000763575.1 | flagellar motor switch protein FliM | - |
| HP1CH_RS05305 | - | 1093297..1094064 (-) | 768 | WP_000602430.1 | RNA polymerase sigma factor FliA | - |
| HP1CH_RS05310 | - | 1094042..1094356 (-) | 315 | WP_000868000.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 43793.44 Da Isoelectric Point: 8.0443
>NTDB_id=55237 HP1CH_RS05275 WP_000060246.1 1088507..1089682(+) (rarA) [Helicobacter pylori 26695-1CH]
MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAK
ALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAK
ALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
Nucleotide
Download Length: 1176 bp
>NTDB_id=55237 HP1CH_RS05275 WP_000060246.1 1088507..1089682(+) (rarA) [Helicobacter pylori 26695-1CH]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAGTAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCTATATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTTAAATTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAAAATACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATTTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGATCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAGGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGACGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAAAAACGCTACAATCCTTACGGCCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCGTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCGAACGCCCTTAATTTAGCCGCTTCTTGTTTGTTTGCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGATTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAGTAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCTATATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTTAAATTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAAAATACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATTTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGATCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAGGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGACGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAAAAACGCTACAATCCTTACGGCCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCGTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCGAACGCCCTTAATTTAGCCGCTTCTTGTTTGTTTGCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGATTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
37.379 |
100 |
0.394 |