Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LRP95_RS24045 Genome accession   NZ_CP089745
Coordinates   5178698..5179123 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain Pa608     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5173698..5184123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRP95_RS24030 pilX 5174262..5174849 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  LRP95_RS24035 pilY1 5174861..5178352 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  LRP95_RS24040 pilY2 5178354..5178701 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  LRP95_RS24045 comF 5178698..5179123 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  LRP95_RS24050 ispH 5179170..5180114 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LRP95_RS24055 fkpB 5180200..5180640 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  LRP95_RS24060 lspA 5180633..5181142 (-) 510 WP_003102615.1 signal peptidase II -
  LRP95_RS24065 ileS 5181135..5183966 (-) 2832 WP_014603309.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=552357 LRP95_RS24045 WP_003094721.1 5178698..5179123(+) (comF) [Pseudomonas aeruginosa strain Pa608]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=552357 LRP95_RS24045 WP_003094721.1 5178698..5179123(+) (comF) [Pseudomonas aeruginosa strain Pa608]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383