Detailed information NTG0552239

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: LUV29_RS14940
• Genome accession: NZ_CP089592
• Coordinates: 2816933..2818198 (+)
• Length: 421 a.a.
• NCBI ID: WP_004398500.1
• Uniprot ID: O34528
• Organism: Bacillus subtilis strain Bsi
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2811933..2823198

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LUV29_RS14920 (LUV29_14920)	yrrB	2813304..2813924 (-)	621	WP_010886584.1	tetratricopeptide repeat protein	-
LUV29_RS14925 (LUV29_14925)	mnmA	2814010..2815125 (-)	1116	WP_004398509.1	tRNA 2-thiouridine(34) synthase MnmA	-
LUV29_RS14930 (LUV29_14930)	iscSA	2815156..2816295 (-)	1140	WP_003246057.1	cysteine desulfurase family protein	-
LUV29_RS14935 (LUV29_14935)	cymR	2816314..2816730 (-)	417	WP_003225879.1	cysteine metabolism transcriptional regulator CymR	-
LUV29_RS14940 (LUV29_14940)	rarA	2816933..2818198 (+)	1266	WP_004398500.1	replication-associated recombination protein A	Machinery gene
LUV29_RS14945 (LUV29_14945)	tcdA	2818240..2819004 (-)	765	WP_009967893.1	tRNA threonylcarbamoyladenosine dehydratase	-
LUV29_RS14955 (LUV29_14955)	aspS	2819340..2821118 (-)	1779	WP_003229758.1	aspartate--tRNA ligase	-
LUV29_RS14960 (LUV29_14960)	hisS	2821132..2822406 (-)	1275	WP_003229755.1	histidine--tRNA ligase	-
LUV29_RS14965 (LUV29_14965)	yrzK	2822788..2822958 (-)	171	WP_004399157.1	YrzK family protein	-

Sequence

Protein

• Length: 421 a.a.
• Molecular weight: 46514.38 Da
• Isoelectric Point: 7.2043

>NTDB_id=552239 LUV29_RS14940 WP_004398500.1 2816933..2818198(+) (rarA) [Bacillus subtilis strain Bsi]
MKPLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDME
IVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPELIKQALER
ALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQKKSFSHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESIARRLLVIAYEDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAV
IELCLSPKSNSAILAIDEALADIRAGKIGDVPKHLKDAHYKGAQELGRGIDYKYPHNYDNGWVEQQYLPDPLKNKQYYKP
KQTGKFESALKQVYDKLMKRK

Nucleotide

• Length: 1266 bp

>NTDB_id=552239 LUV29_RS14940 WP_004398500.1 2816933..2818198(+) (rarA) [Bacillus subtilis strain Bsi]
ATGAAGCCATTGGCATATCGGATGCGTCCGACAAAAATAGAGGATATTATCGGCCAGCAGCATCTGGTGGCTGAAGATAA
AATTATTGGCAGAATGGTCCAGGCAAAACATTTGTCATCCATGATTTTGTACGGGCCGCCCGGAATTGGAAAAACATCAA
TCGCAACAGCAATCGCCGGTTCAACAAGTATTGCTTTTCGAAAGCTGAATGCTGTCATTAACAATAAAAAAGATATGGAA
ATCGTAGCTCAGGAAGCCAAGATGTCCGGCCAAGTGATTTTGATTCTGGATGAAGTCCACAGGCTGGATAAAGGAAAACA
GGATTTTCTATTACCCTATTTAGAAAACGGAATGATCATTTTGATCGGAGCAACGACGGCTAACCCGTATCATGCCATTA
ATCCGGCGATCAGAAGCCGGACCCAGATTTTTGAGCTTGAACCGTTAACACCTGAACTGATTAAACAGGCACTGGAACGT
GCGCTCCATGATGAGCATCGGGGCCTTGGCACCTATTCTGTATCCATTGATGATCAGGCGATGGAGCATTTTGCCCACGG
ATGCGGAGGAGATGTCCGCTCCGCTTTAAATGCGCTTGAGCTTGCCGTGTTGTCAACGAAGGAGTCAGCAGACGGTGAAA
TTCACATTACATTAGAAACCGCGGAAGAATGCTTGCAGAAAAAAAGCTTTTCTCACGATAAAGATGGTGACGCGCATTAT
GATGTACTGTCCGCTTTTCAAAAATCAATCCGCGGCTCTGATGCCAACGCTGCTCTTCACTATTTGGCTAGATTAATTGA
AGCCGGTGATCTGGAGAGCATCGCAAGACGATTGCTTGTTATCGCCTATGAGGATATCGGTTTAGCAAGCCCGCAAGCCG
GCCCTAGAGTGCTGAACGCTATTCAGACCGCTGAGCGAGTCGGGTTTCCTGAAGCGCGAATCCCGCTGGCCAACGCAGTT
ATTGAGCTTTGCCTCTCACCGAAATCAAACTCTGCCATTCTGGCAATCGATGAGGCCCTGGCAGATATCAGAGCCGGAAA
AATTGGGGATGTCCCGAAGCATTTAAAAGACGCGCATTATAAAGGAGCTCAGGAATTAGGAAGAGGAATCGACTATAAAT
ACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCG
AAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (172-251)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

3D structure

• AlphaFold DB: O34528

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	100	100	1