Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   J4854_RS03895 Genome accession   NZ_CP072329
Coordinates   758954..759793 (+) Length   279 a.a.
NCBI ID   WP_200772310.1    Uniprot ID   A0A9X0WMH5
Organism   Streptococcus lactarius strain CCUG 66490     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 753954..764793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS03865 (J4854_03865) - 754221..755102 (+) 882 WP_187539308.1 F0F1 ATP synthase subunit gamma -
  J4854_RS03870 (J4854_03870) atpD 755177..756583 (+) 1407 WP_200772306.1 F0F1 ATP synthase subunit beta -
  J4854_RS03875 (J4854_03875) - 756597..757016 (+) 420 WP_200772307.1 F0F1 ATP synthase subunit epsilon -
  J4854_RS03880 (J4854_03880) - 757114..757344 (+) 231 WP_200772308.1 DUF1146 family protein -
  J4854_RS03885 (J4854_03885) murA 757411..758700 (+) 1290 WP_200772309.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  J4854_RS03890 (J4854_03890) - 758684..758872 (+) 189 WP_187539297.1 DNA-directed RNA polymerase subunit beta -
  J4854_RS03895 (J4854_03895) endA 758954..759793 (+) 840 WP_200772310.1 DNA/RNA non-specific endonuclease Machinery gene
  J4854_RS03900 (J4854_03900) - 759875..760594 (+) 720 WP_200772311.1 matrixin family metalloprotease -
  J4854_RS03905 (J4854_03905) - 760702..762609 (+) 1908 WP_200772312.1 ABC-F family ATP-binding cassette domain-containing protein -
  J4854_RS03910 (J4854_03910) - 762610..763473 (+) 864 WP_200772313.1 XRE/MutR family transcriptional regulator -
  J4854_RS03915 (J4854_03915) - 763553..764731 (+) 1179 WP_200772314.1 MFS transporter -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30383.86 Da        Isoelectric Point: 9.6665

>NTDB_id=552049 J4854_RS03895 WP_200772310.1 758954..759793(+) (endA) [Streptococcus lactarius strain CCUG 66490]
MTKQKVTKRTKQTLAGFLVATALAIGGYFIHQPTQKGGGDQVVSVVTSSQNETPSKELASSVLTTSARSQLGDQLEWNGT
GAFVVKGNRTDLDASVASQPYADNKTKEVQGKTVPMVANALMSKATRQYRDREATGSGQTDWKPAGWHQVHNLSGEYDHA
VDRGHLLGYALIGNLKGFDASTSNPKNIAVQTAWSNQANDPHSTGQNYYETLVRKALDKNKRVRYRVTLIYNQPEDLIPL
GSQIEAKSSDGTLEFNVFVPNVQSGISLDYQTGKVTVHN

Nucleotide


Download         Length: 840 bp        

>NTDB_id=552049 J4854_RS03895 WP_200772310.1 758954..759793(+) (endA) [Streptococcus lactarius strain CCUG 66490]
ATGACAAAACAAAAAGTAACCAAACGTACCAAACAAACCTTGGCAGGCTTTTTGGTCGCTACAGCCCTAGCGATTGGTGG
CTATTTTATCCATCAACCAACTCAGAAAGGTGGAGGTGACCAGGTTGTTTCCGTGGTGACCAGTAGCCAAAATGAAACCC
CTAGTAAGGAATTAGCCAGTTCTGTCCTGACAACTTCCGCTCGTTCACAATTAGGAGATCAGTTAGAGTGGAATGGAACG
GGAGCCTTTGTGGTCAAGGGGAATCGGACCGATCTGGATGCCAGTGTCGCTAGTCAACCCTATGCGGATAACAAGACGAA
AGAAGTACAGGGAAAGACTGTACCGATGGTTGCCAATGCCTTGATGAGCAAGGCAACGCGCCAATATCGTGATCGGGAAG
CAACAGGAAGTGGTCAAACCGATTGGAAACCAGCAGGTTGGCATCAGGTCCATAATCTATCAGGTGAATATGACCATGCG
GTAGATCGAGGGCATTTATTGGGCTATGCTTTGATTGGCAATCTCAAAGGCTTTGATGCCTCGACTAGCAATCCAAAAAA
TATTGCTGTGCAAACTGCCTGGTCCAATCAAGCCAATGATCCTCATTCCACTGGTCAAAACTACTATGAGACCCTGGTTC
GAAAAGCCTTAGATAAGAACAAGCGGGTCCGCTATCGGGTCACTTTGATCTACAATCAGCCGGAAGATCTGATTCCTTTA
GGTTCTCAGATCGAAGCCAAATCGAGTGACGGGACGCTGGAATTTAATGTCTTTGTGCCCAATGTTCAAAGTGGGATCAG
CCTGGATTACCAAACAGGAAAAGTAACCGTTCATAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

64.706

97.491

0.631
  endA Streptococcus pneumoniae D39

64.706

97.491

0.631
  endA Streptococcus pneumoniae R6

64.706

97.491

0.631
  endA Streptococcus pneumoniae TIGR4

64.706

97.491

0.631