Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   LUV23_RS17845 Genome accession   NZ_CP089536
Coordinates   4506584..4508827 (-) Length   747 a.a.
NCBI ID   WP_206332482.1    Uniprot ID   -
Organism   Streptomyces sp. HNM0561     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4501584..4513827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUV23_RS17830 (LUV23_17830) - 4501743..4501967 (+) 225 WP_087684215.1 heavy-metal-associated domain-containing protein -
  LUV23_RS17835 (LUV23_17835) - 4502055..4504412 (+) 2358 WP_079257712.1 heavy metal translocating P-type ATPase -
  LUV23_RS17840 (LUV23_17840) - 4505143..4506432 (-) 1290 WP_069864091.1 citrate synthase -
  LUV23_RS17845 (LUV23_17845) recD/recD2/recDB 4506584..4508827 (-) 2244 WP_206332482.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LUV23_RS17850 (LUV23_17850) - 4509001..4510017 (+) 1017 WP_206332483.1 LacI family DNA-binding transcriptional regulator -
  LUV23_RS17855 (LUV23_17855) - 4510284..4511801 (+) 1518 WP_147966471.1 sugar ABC transporter ATP-binding protein -
  LUV23_RS17860 (LUV23_17860) - 4511791..4513740 (+) 1950 WP_206332484.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 80722.18 Da        Isoelectric Point: 6.3953

>NTDB_id=551973 LUV23_RS17845 WP_206332482.1 4506584..4508827(-) (recD/recD2/recDB) [Streptomyces sp. HNM0561]
MLKLAVVEGVLERITYANEENGYTVARVDTGRGSGDLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVENYQTVLPA
TVQGIRRYLGSGLIKGIGPRIADRITEHFGIDTLDVIEERPERLIEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYGDASISIVKNQPYRLAADVWGIGFLTADKIAQSVGIPHDSPDRVKAGLQYALSQSADQGHCYLPEEQL
IADAVKLLQVDTGLVIDCLGELAAEEEGVVREPVPGPEGGEPISAVYLVPFHRAEISLAGQALRLLRTEEDRMPAFQGVD
WDKALGWLASRTGADLAPEQSQAVRLALTEKVAVLTGGPGCGKSFTVRSVVELARAKQAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLAKAVPPGAHLLFVGDVDQLPSVGAGEVLCDLLAP
GSPVPAVRLTRIFRQAQQSGVVTNAHRINEGVPPVTQGLSDFFLFVEDDTEEAGRLTVDVAARRIPAKFGLDPRRDVQVL
APMHRGPAGAGTLNGLLQQAITPARPDVPERRFGGRVFRVGDKVTQIRNNYEKGANGVFNGTVGVVTSLDTDEQRLTVRT
DEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKRLVVLVGSRRALGQAVRTVS
AGRRCTALDHRLGGDVRVERVKRVSER

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=551973 LUV23_RS17845 WP_206332482.1 4506584..4508827(-) (recD/recD2/recDB) [Streptomyces sp. HNM0561]
ATGCTCAAACTCGCGGTGGTCGAAGGGGTCCTGGAGCGGATCACCTACGCCAATGAGGAAAACGGCTATACGGTCGCCCG
GGTCGACACCGGCCGTGGCTCCGGCGATCTGCTCACCGTCGTCGGCTCGCTGCTGGGCGCCCAGCCGGGCGAGTCGCTGC
GCATGGAGGGCCGCTGGGGTTCCCATCCGCAATATGGCAAACAGTTCACGGTCGAGAATTACCAGACCGTCCTCCCCGCC
ACCGTCCAGGGCATCCGGCGCTATCTCGGCTCGGGCCTGATCAAGGGCATCGGCCCCCGCATCGCCGACCGGATCACCGA
GCACTTCGGCATCGACACCCTCGATGTCATCGAGGAGCGGCCGGAGCGGCTGATCGAGGTCCCGGGCCTGGGCCCCAAGC
GCACCAAGATGATCGCCGCCGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTGATGGTCTTCCTCCAGGGGGTGGGCGTC
TCCACCTCCATCGCGGTGCGGATCTACAAAAAGTATGGCGACGCGTCGATTTCGATTGTGAAGAACCAGCCGTACCGGCT
GGCGGCCGACGTCTGGGGCATCGGCTTTCTCACCGCCGACAAGATCGCCCAGTCGGTCGGCATCCCCCATGACAGCCCCG
ACCGGGTGAAGGCCGGTCTCCAGTACGCGCTGTCCCAGTCCGCCGACCAGGGCCACTGCTATCTCCCCGAGGAGCAACTC
ATCGCGGACGCCGTGAAGTTGCTCCAGGTGGACACCGGCCTGGTCATCGACTGCCTGGGCGAGCTCGCCGCCGAGGAGGA
GGGCGTGGTGCGCGAGCCGGTCCCGGGCCCGGAGGGCGGCGAGCCGATCTCCGCCGTCTATCTGGTGCCCTTCCACCGCG
CCGAGATCTCCCTCGCGGGCCAGGCGCTGCGGCTGCTGCGCACCGAGGAGGACCGGATGCCCGCCTTCCAGGGCGTGGAC
TGGGACAAGGCGCTGGGCTGGCTGGCGAGCCGCACCGGCGCCGATCTGGCGCCCGAGCAGAGCCAGGCGGTGCGGCTCGC
GCTGACCGAGAAGGTGGCGGTGCTCACCGGCGGGCCGGGCTGCGGCAAGTCCTTCACGGTGCGGTCCGTGGTGGAGCTCG
CCCGCGCCAAGCAGGCCAAGGTGGTGCTCGCGGCGCCCACCGGCCGGGCCGCCAAGCGGCTGTCCGAGCTGACCGGCGCC
GAGGCGTCCACCGTCCACCGGCTGCTGGAGCTCAAGCCCGGCGGGGACGCGGCGTACGACAGGGACCGCCCGCTCGACGC
GGATCTCGTGGTGGTCGACGAGGCGTCGATGCTCGATCTGCTGCTGGCCAACAAGCTGGCCAAGGCGGTTCCGCCCGGTG
CCCATCTGCTCTTCGTCGGGGATGTGGACCAGCTGCCCAGCGTGGGCGCCGGCGAGGTGCTGTGCGATCTGCTGGCCCCC
GGCAGCCCCGTCCCGGCGGTGCGGCTGACCCGGATCTTCCGCCAGGCCCAGCAGTCCGGGGTGGTCACCAACGCCCACCG
GATCAACGAGGGGGTGCCGCCGGTCACCCAGGGCCTGTCGGATTTCTTTCTCTTCGTCGAGGACGACACCGAGGAGGCCG
GGCGGCTCACGGTCGATGTCGCGGCCCGCCGCATCCCCGCGAAGTTCGGCCTCGATCCCCGCCGTGACGTGCAGGTTCTG
GCCCCGATGCACCGGGGCCCGGCGGGCGCCGGCACGCTCAACGGACTGCTTCAGCAGGCCATCACCCCGGCCCGCCCGGA
CGTCCCGGAGCGCCGCTTCGGCGGCCGGGTCTTCCGGGTCGGCGACAAGGTGACCCAGATCCGTAACAATTATGAGAAAG
GGGCCAACGGGGTCTTCAACGGCACGGTTGGCGTCGTCACCTCACTCGACACCGATGAGCAGCGGCTGACCGTGCGGACG
GACGAGGACGAGGAGGTACCGTACGACTTCGACGAGCTGGACGAGCTGGCTCATGCCTATGCGGTGACCATCCATCGGTC
CCAGGGCAGTGAGTACCCGGCCGTCGTGATCCCGGTGACCACCGGGGCCTGGATGATGTTGCAACGCAACCTCCTGTACA
CGGCCGTGACGCGTGCCAAGCGCCTTGTGGTGCTGGTCGGCTCGCGCCGTGCGCTCGGGCAGGCGGTGCGCACCGTCTCG
GCGGGGAGGCGCTGTACCGCGCTGGATCACCGACTCGGCGGCGATGTGAGAGTCGAGCGTGTCAAGAGGGTTTCCGAACG
ATGA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-639)

Helix-hairpin-helix domain (HHH_5)

(94-143)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

AAA domain (AAA_30)

(336-514)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

34.845

100

0.36