Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   J6B42_RS06985 Genome accession   NZ_CP072311
Coordinates   1325511..1325975 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain SC60     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1320511..1330975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6B42_RS06965 (J6B42_06905) - 1320991..1322811 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  J6B42_RS06970 (J6B42_06910) - 1322837..1324006 (-) 1170 WP_007611083.1 aminotransferase A -
  J6B42_RS06975 (J6B42_06915) - 1324207..1324368 (-) 162 WP_007409608.1 hypothetical protein -
  J6B42_RS06980 (J6B42_06920) cheV 1324557..1325468 (+) 912 WP_014304917.1 chemotaxis protein CheV -
  J6B42_RS06985 (J6B42_06925) kre 1325511..1325975 (-) 465 WP_003154622.1 YkyB family protein Regulator
  J6B42_RS06990 (J6B42_06930) - 1326098..1327390 (-) 1293 WP_024085236.1 MFS transporter -
  J6B42_RS06995 (J6B42_06935) - 1327466..1327960 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  J6B42_RS07000 (J6B42_06940) - 1328035..1328898 (-) 864 WP_025851492.1 metallophosphoesterase -
  J6B42_RS07005 (J6B42_06945) fadH 1329042..1329806 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  J6B42_RS07010 (J6B42_06950) - 1329916..1330461 (+) 546 Protein_1320 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=551887 J6B42_RS06985 WP_003154622.1 1325511..1325975(-) (kre) [Bacillus velezensis strain SC60]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=551887 J6B42_RS06985 WP_003154622.1 1325511..1325975(-) (kre) [Bacillus velezensis strain SC60]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929