Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   J4774_RS18645 Genome accession   NZ_CP072310
Coordinates   3749771..3750550 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain AD8     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3744771..3755550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4774_RS18625 trmFO 3745458..3746765 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  J4774_RS18630 xerC 3746835..3747752 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  J4774_RS18635 hslV 3747768..3748313 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  J4774_RS18640 hslU 3748321..3749733 (+) 1413 WP_254900101.1 HslU--HslV peptidase ATPase subunit -
  J4774_RS18645 codY 3749771..3750550 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  J4774_RS18650 flgB 3750904..3751293 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  J4774_RS18655 flgC 3751293..3751745 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  J4774_RS18660 fliE 3751756..3752076 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  J4774_RS18665 fliF 3752119..3753729 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  J4774_RS18670 fliG 3753742..3754758 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  J4774_RS18675 fliH 3754751..3755506 (+) 756 WP_015388237.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=551854 J4774_RS18645 WP_003154263.1 3749771..3750550(+) (codY) [Bacillus velezensis strain AD8]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=551854 J4774_RS18645 WP_003154263.1 3749771..3750550(+) (codY) [Bacillus velezensis strain AD8]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471