Detailed information NTG0551516

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: J6F37_RS10665
• Genome accession: NZ_CP072280
• Coordinates: 2224570..2225271 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain KSK10
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2219570..2230271

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J6F37_RS10635 (J6F37_10635)	-	2219877..2220320 (-)	444	WP_045544205.1	SRPBCC family protein	-
J6F37_RS10640 (J6F37_10640)	tadA	2220390..2220893 (-)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
J6F37_RS10645 (J6F37_10645)	-	2220900..2222024 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
J6F37_RS10650 (J6F37_10650)	ung	2222021..2222734 (-)	714	WP_001177530.1	uracil-DNA glycosylase	-
J6F37_RS10655 (J6F37_10655)	-	2222785..2223381 (-)	597	WP_000908453.1	6-pyruvoyl trahydropterin synthase family protein	-
J6F37_RS10660 (J6F37_10660)	gspK	2223611..2224570 (-)	960	WP_045544206.1	type II secretion system minor pseudopilin GspK	-
J6F37_RS10665 (J6F37_10665)	xcpW	2224570..2225271 (-)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
J6F37_RS10670 (J6F37_10670)	xcpV	2225271..2225651 (-)	381	WP_045544207.1	type II secretion system minor pseudopilin GspI	Machinery gene
J6F37_RS10675 (J6F37_10675)	-	2225641..2226195 (-)	555	WP_000841373.1	type II secretion system protein	-
J6F37_RS10680 (J6F37_10680)	-	2226205..2226813 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
J6F37_RS10685 (J6F37_10685)	-	2226851..2227624 (-)	774	WP_000497298.1	TatD family hydrolase	-
J6F37_RS10690 (J6F37_10690)	-	2227642..2227983 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
J6F37_RS10695 (J6F37_10695)	-	2227995..2228975 (-)	981	WP_045544208.1	DNA polymerase III subunit delta'	-
J6F37_RS10700 (J6F37_10700)	kdsB	2228987..2229748 (-)	762	WP_045544209.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=551516 J6F37_RS10665 WP_000594572.1 2224570..2225271(-) (xcpW) [Acinetobacter baumannii strain KSK10]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=551516 J6F37_RS10665 WP_000594572.1 2224570..2225271(-) (xcpW) [Acinetobacter baumannii strain KSK10]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991