Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LUY93_RS05285 Genome accession   NZ_CP089500
Coordinates   1030053..1030826 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 3144_IIV_ST8     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1025053..1035826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY93_RS05265 trmFO 1025397..1026704 (+) 1308 WP_407545536.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  LUY93_RS05270 xerC 1027121..1028017 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  LUY93_RS05275 hslV 1028014..1028559 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  LUY93_RS05280 hslU 1028625..1030028 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  LUY93_RS05285 codY 1030053..1030826 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LUY93_RS05290 - 1030877..1030969 (+) 93 WP_001790530.1 hypothetical protein -
  LUY93_RS05295 rpsB 1031168..1031935 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  LUY93_RS05300 - 1031969..1032082 (+) 114 WP_001789890.1 hypothetical protein -
  LUY93_RS05305 tsf 1032117..1032998 (+) 882 WP_000201387.1 translation elongation factor Ts -
  LUY93_RS05310 pyrH 1033135..1033857 (+) 723 WP_000057330.1 UMP kinase -
  LUY93_RS05315 frr 1033876..1034430 (+) 555 WP_001280006.1 ribosome recycling factor -
  LUY93_RS05320 - 1034803..1035573 (+) 771 WP_407545537.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=551472 LUY93_RS05285 WP_000055337.1 1030053..1030826(+) (codY) [Staphylococcus aureus strain 3144_IIV_ST8]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=551472 LUY93_RS05285 WP_000055337.1 1030053..1030826(+) (codY) [Staphylococcus aureus strain 3144_IIV_ST8]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428