Detailed information NTG0551469

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: J6F34_RS10660
• Genome accession: NZ_CP072275
• Coordinates: 2223382..2224083 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain KSK7
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2218382..2229083

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J6F34_RS10630 (J6F34_10630)	-	2218689..2219132 (-)	444	WP_045544205.1	SRPBCC family protein	-
J6F34_RS10635 (J6F34_10635)	tadA	2219202..2219705 (-)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
J6F34_RS10640 (J6F34_10640)	-	2219712..2220836 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
J6F34_RS10645 (J6F34_10645)	ung	2220833..2221546 (-)	714	WP_001177530.1	uracil-DNA glycosylase	-
J6F34_RS10650 (J6F34_10650)	-	2221597..2222193 (-)	597	WP_000908453.1	6-pyruvoyl trahydropterin synthase family protein	-
J6F34_RS10655 (J6F34_10655)	gspK	2222423..2223382 (-)	960	WP_045544206.1	type II secretion system minor pseudopilin GspK	-
J6F34_RS10660 (J6F34_10660)	xcpW	2223382..2224083 (-)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
J6F34_RS10665 (J6F34_10665)	xcpV	2224083..2224463 (-)	381	WP_045544207.1	type II secretion system minor pseudopilin GspI	Machinery gene
J6F34_RS10670 (J6F34_10670)	-	2224453..2225007 (-)	555	WP_000841373.1	type II secretion system protein	-
J6F34_RS10675 (J6F34_10675)	-	2225017..2225625 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
J6F34_RS10680 (J6F34_10680)	-	2225663..2226436 (-)	774	WP_000497298.1	TatD family hydrolase	-
J6F34_RS10685 (J6F34_10685)	-	2226454..2226795 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
J6F34_RS10690 (J6F34_10690)	-	2226807..2227787 (-)	981	WP_045544208.1	DNA polymerase III subunit delta'	-
J6F34_RS10695 (J6F34_10695)	kdsB	2227799..2228560 (-)	762	WP_045544209.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=551469 J6F34_RS10660 WP_000594572.1 2223382..2224083(-) (xcpW) [Acinetobacter baumannii strain KSK7]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=551469 J6F34_RS10660 WP_000594572.1 2223382..2224083(-) (xcpW) [Acinetobacter baumannii strain KSK7]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991