Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   B938_RS08390 Genome accession   NC_019842
Coordinates   1665220..1665999 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis AS43.3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1660220..1670999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B938_RS08370 (B938_08290) trmFO 1660907..1662214 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  B938_RS08375 (B938_08295) xerC 1662284..1663201 (+) 918 WP_015239850.1 tyrosine recombinase XerC -
  B938_RS08380 (B938_08300) hslV 1663217..1663762 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  B938_RS08385 (B938_08305) hslU 1663779..1665182 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  B938_RS08390 (B938_08310) codY 1665220..1665999 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  B938_RS08395 (B938_08315) flgB 1666352..1666741 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  B938_RS08400 (B938_08320) flgC 1666741..1667193 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  B938_RS08405 (B938_08325) fliE 1667204..1667524 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  B938_RS08410 (B938_08330) fliF 1667567..1669177 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  B938_RS08415 (B938_08335) fliG 1669190..1670206 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  B938_RS08420 (B938_08340) fliH 1670199..1670954 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=55146 B938_RS08390 WP_003154263.1 1665220..1665999(+) (codY) [Bacillus velezensis AS43.3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=55146 B938_RS08390 WP_003154263.1 1665220..1665999(+) (codY) [Bacillus velezensis AS43.3]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment