Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LUY98_RS04390 Genome accession   NZ_CP089497
Coordinates   851547..852320 (-) Length   257 a.a.
NCBI ID   WP_000055334.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 3045_IIV_ST8     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 846547..857320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY98_RS04355 - 846801..847571 (-) 771 WP_000473705.1 isoprenyl transferase -
  LUY98_RS04360 frr 847943..848497 (-) 555 WP_001280003.1 ribosome recycling factor -
  LUY98_RS04365 pyrH 848516..849238 (-) 723 WP_000057330.1 UMP kinase -
  LUY98_RS04370 tsf 849375..850256 (-) 882 WP_000201387.1 translation elongation factor Ts -
  LUY98_RS04375 - 850291..850404 (-) 114 WP_001789890.1 hypothetical protein -
  LUY98_RS04380 rpsB 850438..851205 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  LUY98_RS04385 - 851404..851496 (-) 93 WP_031785459.1 hypothetical protein -
  LUY98_RS04390 codY 851547..852320 (-) 774 WP_000055334.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LUY98_RS04395 hslU 852345..853748 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  LUY98_RS04400 hslV 853814..854359 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  LUY98_RS04405 xerC 854356..855252 (-) 897 WP_001015604.1 tyrosine recombinase XerC -
  LUY98_RS04410 trmFO 855670..856977 (-) 1308 WP_000195251.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28727.12 Da        Isoelectric Point: 6.0680

>NTDB_id=551304 LUY98_RS04390 WP_000055334.1 851547..852320(-) (codY) [Staphylococcus aureus strain 3045_IIV_ST8]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENKELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=551304 LUY98_RS04390 WP_000055334.1 851547..852320(-) (codY) [Staphylococcus aureus strain 3045_IIV_ST8]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAATAAAGAGTTGTTTAT
TGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTATTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGC
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428