Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LUY91_RS04385 Genome accession   NZ_CP089495
Coordinates   848581..849354 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain E1202_II_ST496     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 843581..854354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY91_RS04350 - 843834..844604 (-) 771 WP_000473701.1 isoprenyl transferase -
  LUY91_RS04355 frr 844977..845531 (-) 555 WP_001280006.1 ribosome recycling factor -
  LUY91_RS04360 pyrH 845550..846272 (-) 723 WP_000057330.1 UMP kinase -
  LUY91_RS04365 tsf 846409..847290 (-) 882 WP_000201387.1 translation elongation factor Ts -
  LUY91_RS04370 - 847325..847438 (-) 114 WP_001789890.1 hypothetical protein -
  LUY91_RS04375 rpsB 847472..848239 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  LUY91_RS04380 - 848438..848530 (-) 93 WP_001790530.1 hypothetical protein -
  LUY91_RS04385 codY 848581..849354 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LUY91_RS04390 hslU 849379..850782 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  LUY91_RS04395 hslV 850848..851393 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  LUY91_RS04400 xerC 851390..852286 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  LUY91_RS04405 trmFO 852703..854010 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=551215 LUY91_RS04385 WP_000055337.1 848581..849354(-) (codY) [Staphylococcus aureus strain E1202_II_ST496]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=551215 LUY91_RS04385 WP_000055337.1 848581..849354(-) (codY) [Staphylococcus aureus strain E1202_II_ST496]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428