Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   J6M09_RS08500 Genome accession   NZ_CP072190
Coordinates   1733385..1735154 (+) Length   589 a.a.
NCBI ID   WP_225908209.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20190305E2-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1728385..1740154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6M09_RS08485 (J6M09_08490) - 1729932..1731125 (+) 1194 WP_064964479.1 endonuclease/exonuclease/phosphatase family protein -
  J6M09_RS08490 (J6M09_08495) - 1731230..1732858 (+) 1629 WP_064964478.1 acyl-CoA carboxylase subunit beta -
  J6M09_RS08495 (J6M09_08500) - 1732858..1733280 (+) 423 WP_064970354.1 hypothetical protein -
  J6M09_RS08500 (J6M09_08505) comEC 1733385..1735154 (+) 1770 WP_225908209.1 ComEC/Rec2 family competence protein Machinery gene
  J6M09_RS08505 (J6M09_08510) - 1735278..1735946 (+) 669 WP_004918227.1 succinate dehydrogenase cytochrome b subunit -
  J6M09_RS08510 (J6M09_08515) - 1736011..1738023 (+) 2013 WP_004918229.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  J6M09_RS08515 (J6M09_08520) - 1738047..1738817 (+) 771 WP_004918231.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  J6M09_RS08520 (J6M09_08525) dinB 1738903..1739985 (+) 1083 WP_064970351.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 68767.18 Da        Isoelectric Point: 10.0234

>NTDB_id=551054 J6M09_RS08500 WP_225908209.1 1733385..1735154(+) (comEC) [Riemerella anatipestifer strain 20190305E2-2]
MKKQILFSLFISFSLGVFLQDLNGFSWQQLNLIATLGVISLGLIWLKVDWLVRGRIWLLNIFFLCFGVFTHYLNSEKSVL
PSVSKKEELVFKIEQKLNSTAKNKRYEITAFHQNQPFKVVLSIPKDLEELDYKHYYQSQLSLYPLESSKNNYQFDYAKYQ
ARKAVYYKAYAKDLHKAPKSELTFSEKMKQWRLELLSNIDKNEKLSQQTRAFLKGIVLADRTEVDAETNTNFRRSGLTHV
LAISGSHIAIIFGVIYMLLSLTVPAKFRTGVILFSLVLIWVFAWFIGWGSSVVRSCIMLTVYFGFVLLQRKPQVLDALAL
AGLGILMVDTQELFSVGFQLSFSAVLGIYWFNKPIIRLFPNPRNKIQKLLLYTFTMSTAAQLGTMPIVIYYFHQYSAWSI
LANLVVLPLMEFVIILSFLMTIVFGLGVYWSWLSFAYDWLIKALLWLIGFFGKIELGYFQDIPLSVWEMGVLAVRLYFLR
EILVRFRWRGFMKLMFSVLLFFGIKMGLDVRAYHDKEARWHNHYHTKVFSVLDKGKVYFWVSDKDNLEVLESYLIKPYVI
SKRAESYKVKMMSEEINEVIFNGKRYPSQ

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=551054 J6M09_RS08500 WP_225908209.1 1733385..1735154(+) (comEC) [Riemerella anatipestifer strain 20190305E2-2]
GTGAAAAAGCAAATTCTCTTTAGCCTCTTTATAAGTTTTTCATTAGGTGTCTTTTTGCAAGACCTTAATGGGTTCTCGTG
GCAACAGCTCAATCTTATAGCTACATTAGGAGTTATTAGCCTTGGGTTAATTTGGTTAAAAGTGGATTGGTTAGTTCGGG
GCAGAATATGGTTACTTAATATCTTTTTTCTTTGTTTTGGGGTATTTACTCATTACCTTAATTCGGAAAAATCAGTTTTG
CCGAGTGTTTCTAAAAAGGAAGAACTTGTTTTTAAAATTGAACAAAAGCTAAATTCAACGGCTAAAAATAAACGCTATGA
AATAACAGCATTTCATCAAAATCAACCCTTCAAAGTAGTTTTGTCTATTCCAAAAGATTTGGAAGAATTGGATTATAAGC
ACTACTATCAATCTCAACTTAGTTTATATCCGTTGGAGTCTTCCAAGAATAATTACCAGTTTGATTATGCCAAATATCAA
GCGAGGAAAGCTGTTTATTATAAGGCTTATGCCAAAGATTTACACAAAGCGCCAAAATCAGAGCTTACTTTCTCCGAAAA
AATGAAACAATGGCGACTGGAACTCCTTAGCAATATAGATAAAAACGAAAAACTTTCACAACAAACTAGAGCTTTCCTAA
AAGGAATTGTTTTAGCTGATAGAACGGAGGTAGATGCGGAAACTAATACTAATTTTAGGAGAAGTGGTTTAACGCATGTT
TTAGCCATTTCTGGGTCGCATATTGCAATTATCTTTGGGGTTATCTATATGCTACTGAGTTTGACTGTGCCAGCAAAATT
TAGGACAGGTGTAATATTGTTTAGTTTGGTGTTAATTTGGGTTTTTGCTTGGTTTATCGGTTGGGGGAGTTCTGTTGTTA
GGTCTTGTATTATGCTCACTGTTTATTTTGGTTTTGTTCTTTTGCAAAGAAAACCTCAAGTTTTAGACGCTTTAGCCTTA
GCAGGGCTGGGTATTCTGATGGTAGATACACAAGAACTATTTTCAGTAGGGTTTCAGTTGAGTTTTTCTGCGGTGTTGGG
GATTTATTGGTTTAATAAACCTATCATTCGTCTTTTTCCAAATCCTAGAAACAAAATTCAAAAACTATTACTTTATACTT
TTACAATGTCTACAGCGGCACAGCTTGGGACTATGCCTATTGTGATTTATTATTTCCACCAGTATTCGGCGTGGTCTATT
TTGGCTAATCTTGTAGTACTTCCTTTAATGGAATTTGTGATTATACTATCGTTTTTAATGACAATCGTTTTTGGTTTAGG
AGTTTATTGGAGTTGGTTATCTTTTGCTTATGATTGGCTAATTAAAGCCTTGCTATGGCTGATAGGCTTCTTTGGTAAAA
TAGAGTTAGGGTATTTTCAAGATATACCGTTGAGTGTTTGGGAGATGGGAGTTTTGGCGGTAAGGCTTTATTTTCTAAGA
GAAATATTGGTTCGGTTTAGATGGAGAGGTTTTATGAAGTTGATGTTTTCTGTACTTTTATTTTTCGGGATTAAAATGGG
GCTAGATGTTAGAGCTTATCACGATAAAGAAGCGAGGTGGCATAACCATTATCACACTAAGGTATTTTCTGTTTTGGATA
AAGGAAAAGTGTATTTTTGGGTGTCAGATAAAGACAATTTAGAAGTGTTAGAAAGTTATCTCATAAAACCTTATGTGATT
TCTAAAAGAGCTGAAAGCTATAAAGTAAAGATGATGTCTGAAGAAATAAATGAGGTTATTTTTAATGGAAAAAGATATCC
GTCCCAATAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(216-476)

Domain of unknown function (DUF4131) (DUF4131)

(30-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Riemerella anatipestifer ATCC 11845 = DSM 15868

89.304

100

0.893