Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   J6M00_RS04735 Genome accession   NZ_CP072188
Coordinates   956610..958379 (-) Length   589 a.a.
NCBI ID   WP_225910683.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20190121E1-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 951610..963379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6M00_RS04715 (J6M00_04715) dinB 951779..952861 (-) 1083 WP_064970351.1 DNA polymerase IV -
  J6M00_RS04720 (J6M00_04720) - 952947..953717 (-) 771 WP_004918231.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  J6M00_RS04725 (J6M00_04725) - 953741..955753 (-) 2013 WP_004918229.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  J6M00_RS04730 (J6M00_04730) - 955818..956486 (-) 669 WP_214244386.1 succinate dehydrogenase cytochrome b subunit -
  J6M00_RS04735 (J6M00_04735) comEC 956610..958379 (-) 1770 WP_225910683.1 ComEC/Rec2 family competence protein Machinery gene
  J6M00_RS04740 (J6M00_04740) - 958484..958906 (-) 423 WP_064970354.1 hypothetical protein -
  J6M00_RS04745 (J6M00_04745) - 958906..960534 (-) 1629 WP_064964478.1 acyl-CoA carboxylase subunit beta -
  J6M00_RS04750 (J6M00_04750) - 960639..961832 (-) 1194 WP_064964479.1 endonuclease/exonuclease/phosphatase family protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 68810.25 Da        Isoelectric Point: 10.0234

>NTDB_id=551017 J6M00_RS04735 WP_225910683.1 956610..958379(-) (comEC) [Riemerella anatipestifer strain 20190121E1-3]
MKKQILFSLFISFSLGVFLQDLNGFSWQQLNLIATLGVISLGLIWLKVDWLVRGRIWLLNIFFLCFGVFTHYLNSEKSVL
PSVSKKEELVFKIEQKLNSTAKNKRYEITAFHQNQPFKVVLSIPKDLEELDYKHYYQSQLSLYLLESSKNNYQFDYAKYQ
ARKAVYYKAYAKDLHKAPKSELTFSEKMKQWRLELLNNIDKNEKLSQQTRAFLKGIVLADRTEVDAETNTNFRRSGLTHV
LAISGSHIAIIFGVIYMLLSLTVPAKFRTGVILFSLVLIWVFAWFIGWGSSVVRSCIMLTVYFGFVLLQRKPQVLDALAL
AGLGILMVDTQELFSVGFQLSFSAVLGIYWFNKPIIRLFPNPRNKIQKLLLYTFTMSTAAQLGTMPIVIYYFHQYSAWSI
LANLVVLPLMEFVIILSFLMTIVFGLGVYWSWLSFAYDWLIKALLWLIGFFGKIELGYFQDIPLSVWEMGVLAVRLYFLR
EILVRFRWRGFMKLMFSVLLFFGIKMGLDVRAYHDKEARWHNHYHTKVFSVLDKGKVYFWVSDKDNLEVLESYLIKPYVI
SKRAESYKVKMMSEEINEVIFNGKRYPSQ

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=551017 J6M00_RS04735 WP_225910683.1 956610..958379(-) (comEC) [Riemerella anatipestifer strain 20190121E1-3]
GTGAAAAAGCAAATTCTCTTTAGCCTCTTTATAAGTTTTTCATTAGGTGTCTTTTTGCAAGACCTTAATGGGTTCTCGTG
GCAACAGCTCAATCTTATAGCTACATTAGGAGTTATTAGCCTTGGGTTAATTTGGTTAAAAGTGGATTGGTTAGTTCGGG
GCAGAATATGGTTACTTAATATCTTTTTTCTTTGTTTTGGGGTATTTACTCATTACCTTAATTCGGAAAAATCAGTTTTG
CCGAGTGTTTCTAAAAAGGAAGAACTTGTTTTTAAAATTGAACAAAAGCTAAATTCAACGGCTAAAAATAAACGCTATGA
AATAACAGCATTTCATCAAAATCAACCCTTCAAAGTAGTTTTGTCTATTCCAAAAGATTTGGAAGAATTGGATTATAAGC
ACTACTATCAATCTCAACTTAGTTTATATCTGTTGGAGTCTTCCAAGAATAATTACCAGTTTGATTATGCCAAATATCAA
GCGAGGAAAGCTGTTTATTATAAGGCTTATGCCAAAGATTTACACAAAGCGCCAAAATCAGAGCTTACTTTCTCCGAAAA
AATGAAACAATGGCGATTGGAACTCCTTAACAATATAGATAAAAACGAAAAACTTTCACAACAAACTAGAGCTTTCCTAA
AAGGAATTGTTTTAGCTGATAGAACGGAGGTAGATGCGGAAACTAATACTAATTTTAGGAGAAGTGGTTTAACGCATGTT
TTAGCCATTTCTGGGTCGCATATTGCAATTATCTTTGGGGTTATCTATATGCTACTGAGTTTGACTGTGCCAGCAAAATT
TAGGACAGGTGTAATATTGTTTAGTTTGGTGTTAATTTGGGTTTTTGCTTGGTTTATCGGTTGGGGGAGTTCTGTTGTTA
GGTCTTGTATTATGCTCACTGTTTATTTTGGTTTTGTTCTTTTGCAAAGAAAACCTCAAGTTTTAGACGCTTTAGCCTTA
GCAGGGCTGGGTATTCTGATGGTAGATACACAAGAACTATTTTCAGTAGGGTTTCAGTTGAGTTTTTCTGCGGTGTTGGG
GATTTATTGGTTTAATAAACCTATCATTCGTCTTTTTCCAAATCCTAGAAACAAAATTCAAAAACTATTACTTTATACTT
TTACAATGTCTACAGCGGCACAGCTTGGGACTATGCCTATTGTGATTTATTATTTCCACCAGTATTCGGCGTGGTCTATT
TTGGCTAATCTTGTAGTACTTCCTTTAATGGAATTTGTGATTATACTATCGTTTTTAATGACAATCGTTTTTGGTTTAGG
AGTTTATTGGAGTTGGTTATCTTTTGCTTATGATTGGCTAATTAAAGCCTTGCTATGGCTGATAGGCTTCTTTGGTAAAA
TAGAGTTAGGGTATTTTCAAGATATACCGTTGAGTGTTTGGGAGATGGGAGTTTTGGCGGTAAGGCTTTATTTTCTAAGA
GAAATATTGGTTCGGTTTAGATGGAGAGGTTTTATGAAGTTGATGTTTTCTGTACTTTTATTTTTCGGGATTAAAATGGG
GCTAGATGTTAGAGCTTATCACGATAAAGAAGCGAGGTGGCATAACCATTATCACACTAAGGTATTTTCTGTTTTGGATA
AAGGAAAAGTGTATTTTTGGGTGTCAGATAAAGACAATTTAGAAGTGTTAGAAAGTTATCTCATAAAACCTTATGTGATT
TCTAAAAGAGCTGAAAGCTATAAAGTAAAGATGATGTCTGAAGAAATAAATGAGGTTATTTTTAATGGAAAAAGATATCC
GTCCCAATAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(216-476)

Domain of unknown function (DUF4131) (DUF4131)

(30-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Riemerella anatipestifer ATCC 11845 = DSM 15868

89.249

99.491

0.888