Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DEIPE_RS17440 Genome accession   NC_019793
Coordinates   3597261..3597767 (-) Length   168 a.a.
NCBI ID   WP_245557561.1    Uniprot ID   -
Organism   Deinococcus peraridilitoris DSM 19664     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3592261..3602767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIPE_RS25300 (Deipe_3567) - 3593459..3594973 (+) 1515 WP_015237293.1 putative Ig domain-containing protein -
  DEIPE_RS17415 (Deipe_3568) - 3594970..3595416 (+) 447 WP_015237294.1 hypothetical protein -
  DEIPE_RS24540 (Deipe_3569) - 3595425..3595964 (+) 540 WP_041231707.1 hypothetical protein -
  DEIPE_RS17425 (Deipe_3570) - 3596086..3596283 (+) 198 WP_015237296.1 RNA-binding S4 domain-containing protein -
  DEIPE_RS17430 (Deipe_3571) - 3596351..3596872 (+) 522 WP_015237297.1 DUF1684 domain-containing protein -
  DEIPE_RS17435 (Deipe_3572) - 3596888..3597178 (-) 291 WP_157448916.1 hypothetical protein -
  DEIPE_RS17440 (Deipe_3573) comF 3597261..3597767 (-) 507 WP_245557561.1 phosphoribosyltransferase family protein Machinery gene
  DEIPE_RS22495 (Deipe_3574) - 3597915..3598610 (-) 696 WP_015237300.1 nucleoside monophosphate kinase -
  DEIPE_RS17450 (Deipe_3575) - 3598659..3599189 (-) 531 WP_015237301.1 hypothetical protein -
  DEIPE_RS17455 (Deipe_3576) - 3599760..3601178 (+) 1419 WP_015237302.1 PLP-dependent aminotransferase family protein -
  DEIPE_RS17460 (Deipe_3577) - 3601325..3601645 (-) 321 WP_015237303.1 hypothetical protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18355.10 Da        Isoelectric Point: 10.3767

>NTDB_id=55099 DEIPE_RS17440 WP_245557561.1 3597261..3597767(-) (comF) [Deinococcus peraridilitoris DSM 19664]
MSAHSVLSRQAHPHLVSLGRYEGPLRRAVQALKYEGSREVARAIARELAGAVPESWHPEVVCAVPLHERRLRSRGYNQAA
LLAGALAHGLCVPHRELLSRERFTLQQARLSASERRANVEGAFRTVGAVPSRVLLVDDVLTTGTTLAECARMLRCAGADQ
VYFAVAAR

Nucleotide


Download         Length: 507 bp        

>NTDB_id=55099 DEIPE_RS17440 WP_245557561.1 3597261..3597767(-) (comF) [Deinococcus peraridilitoris DSM 19664]
GTGAGCGCGCACTCGGTGCTGTCACGGCAAGCGCACCCGCACCTCGTGTCGCTGGGACGTTACGAGGGGCCGCTGCGCCG
GGCGGTGCAGGCCCTCAAATACGAGGGAAGCCGTGAAGTCGCGCGCGCGATTGCCCGGGAGCTGGCGGGCGCCGTCCCGG
AGAGCTGGCACCCTGAGGTGGTGTGCGCGGTTCCCCTGCACGAGCGCCGTTTGCGCTCGCGTGGTTACAACCAGGCGGCG
CTGCTCGCCGGCGCCCTGGCCCACGGGCTCTGCGTTCCTCACCGCGAACTGCTGAGCCGCGAACGTTTTACCTTACAGCA
GGCCCGACTGTCGGCCAGTGAGCGGCGGGCCAACGTGGAGGGCGCCTTCCGGACGGTTGGCGCCGTTCCATCACGTGTGC
TGCTGGTCGACGATGTGCTGACGACCGGCACCACCCTGGCCGAATGCGCGCGGATGCTCCGGTGCGCGGGCGCCGATCAG
GTCTACTTTGCGGTGGCGGCCCGCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(131-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.627

98.81

0.56

Multiple sequence alignment