Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   J6L78_RS03955 Genome accession   NZ_CP072185
Coordinates   830363..832132 (-) Length   589 a.a.
NCBI ID   WP_228481890.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20190109E1-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 825363..837132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6L78_RS03935 (J6L78_03940) dinB 825531..826613 (-) 1083 WP_214192518.1 DNA polymerase IV -
  J6L78_RS03940 (J6L78_03945) - 826699..827469 (-) 771 WP_004918231.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  J6L78_RS03945 (J6L78_03950) - 827493..829505 (-) 2013 WP_004918229.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  J6L78_RS03950 (J6L78_03955) - 829570..830238 (-) 669 WP_004918227.1 succinate dehydrogenase cytochrome b subunit -
  J6L78_RS03955 (J6L78_03960) comEC 830363..832132 (-) 1770 WP_228481890.1 ComEC/Rec2 family competence protein Machinery gene
  J6L78_RS03960 (J6L78_03965) - 832221..832658 (-) 438 WP_004918223.1 hypothetical protein -
  J6L78_RS03965 (J6L78_03970) - 832658..834286 (-) 1629 WP_004918222.1 acyl-CoA carboxylase subunit beta -
  J6L78_RS03970 (J6L78_03975) - 834391..835584 (-) 1194 WP_004918219.1 endonuclease/exonuclease/phosphatase family protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 69047.68 Da        Isoelectric Point: 10.1105

>NTDB_id=550969 J6L78_RS03955 WP_228481890.1 830363..832132(-) (comEC) [Riemerella anatipestifer strain 20190109E1-1]
MKKQILFSLFISFSLGVFLQDLNGFSWQNLNIIAILGVISLGLIWVKADWVVRIRIWLLNIFFLCFGVFTHYLNSEKSVL
PSVSKKEELVFKIEQKLNSTAKNKRYEITAFHQNQPFKAVLSVPKDLEELDYKHYYQSQLSLYPLESSKNNYQFDYAKFQ
ARKGVYYRAYARDLRKAPKSELTFSEKMKRWRLEFLSNIDKNEKLSQQTRAFLKGIVLADRTEVDAGTNSNFRRSGLAHI
LAISGTHIAIIFGVVYMLLRLVLPVRFRIGVMLLSLSLIWAFAWFIGWGNSVVRACIMLTVYFGFVLLQRKPQVLDSLAL
AGLGILMVDTQELFSVGFQLSFSAVLGIYWFNRPMIRLFPNPRNKIQKLLLYTFTMSTAAQLGTMPIVIYYFHQYSAWSI
LANLVVLPLMEIVIILSFLMTIVFGLGIYWNWLSFTYDWLIKALLWLIGFFGKIEMGYFQDIPLSIWEMGVWAVGLYFLR
EILIRFTWRGFMRLMFSVLLFFGIKMWLDIRAYHDKEAKWHYHYRTKVFSVLDKGKVCFWVADEDNLETLESNLIKPYVI
SKRAESYKVKMMSKEVDEVIFNGKRYLFQ

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=550969 J6L78_RS03955 WP_228481890.1 830363..832132(-) (comEC) [Riemerella anatipestifer strain 20190109E1-1]
GTGAAAAAGCAAATTCTTTTTAGTCTGTTTATAAGTTTTTCATTAGGTGTCTTTTTGCAAGACCTTAATGGGTTCTCGTG
GCAAAATCTCAATATTATAGCTATATTGGGGGTTATTAGTCTTGGGTTAATTTGGGTGAAAGCAGATTGGGTAGTTCGAA
TTAGAATTTGGTTACTCAATATCTTTTTTCTCTGTTTTGGAGTATTTACTCATTACCTTAATTCGGAAAAATCAGTTTTG
CCGAGTGTTTCTAAAAAGGAAGAGCTTGTTTTTAAAATTGAGCAAAAGCTGAATTCAACGGCTAAAAACAAACGCTATGA
AATAACAGCATTTCATCAAAATCAACCTTTTAAAGCAGTTTTATCTGTTCCAAAAGATTTGGAAGAATTGGATTATAAGC
ACTACTATCAGTCTCAACTAAGTCTATATCCGTTGGAGTCTTCCAAGAATAATTACCAGTTTGATTATGCCAAATTTCAA
GCAAGGAAAGGCGTATATTATAGAGCCTATGCCAGAGATTTACGCAAAGCTCCAAAATCAGAGCTTACTTTCTCCGAAAA
AATGAAACGATGGCGATTGGAATTCCTTAGTAATATAGATAAAAACGAAAAACTTTCACAGCAAACTAGAGCTTTCCTAA
AAGGAATTGTATTAGCCGATAGAACAGAGGTAGATGCAGGCACTAATTCCAATTTTAGGCGAAGTGGCTTGGCACATATT
TTGGCTATTTCGGGGACGCACATAGCAATTATATTCGGAGTGGTCTATATGCTGTTGAGGTTAGTGTTGCCTGTTAGATT
TCGGATTGGTGTAATGTTACTTAGTTTGTCGTTAATTTGGGCTTTTGCTTGGTTTATTGGTTGGGGAAATTCTGTTGTTA
GAGCCTGTATTATGCTTACGGTTTATTTTGGTTTTGTCCTTCTGCAAAGGAAACCGCAAGTTTTGGATTCTTTAGCCTTG
GCAGGATTAGGGATTTTGATGGTGGATACACAAGAGTTGTTTTCGGTGGGATTTCAATTGAGTTTTTCGGCAGTATTGGG
AATTTATTGGTTTAATAGACCTATGATTCGTCTTTTTCCAAATCCTAGAAACAAAATTCAAAAACTATTGCTTTACACCT
TCACGATGTCCACGGCGGCACAGCTTGGGACTATGCCTATTGTGATTTATTATTTCCACCAGTATTCAGCGTGGTCTATT
TTGGCTAATCTTGTAGTACTTCCTTTAATGGAAATTGTGATTATACTATCGTTTTTAATGACGATTGTTTTTGGTTTAGG
GATTTATTGGAATTGGCTATCTTTTACTTATGATTGGTTAATTAAAGCGTTGCTATGGCTGATAGGTTTCTTTGGTAAAA
TAGAGATGGGGTATTTTCAAGACATACCGTTGAGTATTTGGGAGATGGGTGTTTGGGCGGTAGGGCTTTATTTTCTAAGA
GAAATATTGATTCGTTTTACATGGAGAGGTTTTATGAGGTTGATGTTTTCTGTGCTTTTATTTTTCGGGATTAAAATGTG
GCTAGATATCAGAGCTTATCACGATAAAGAAGCAAAGTGGCATTACCATTATCGTACTAAAGTGTTCTCTGTTTTGGATA
AAGGTAAGGTGTGCTTTTGGGTGGCGGATGAAGATAATTTAGAAACGTTAGAAAGTAATCTCATAAAACCTTATGTAATT
TCTAAAAGAGCTGAAAGCTATAAAGTAAAAATGATGTCTAAAGAAGTAGATGAGGTTATTTTTAATGGAAAAAGGTATTT
GTTTCAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(29-173)

Competence protein (Competence)

(216-479)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Riemerella anatipestifer ATCC 11845 = DSM 15868

100

100

1