Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LUZ08_RS04385 Genome accession   NZ_CP089489
Coordinates   847251..848024 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain E1174_IV_ST22     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 842251..853024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ08_RS04350 - 842504..843274 (-) 771 WP_000473701.1 isoprenyl transferase -
  LUZ08_RS04355 frr 843647..844201 (-) 555 WP_001280006.1 ribosome recycling factor -
  LUZ08_RS04360 pyrH 844220..844942 (-) 723 WP_000057330.1 UMP kinase -
  LUZ08_RS04365 tsf 845079..845960 (-) 882 WP_000201387.1 translation elongation factor Ts -
  LUZ08_RS04370 - 845995..846108 (-) 114 WP_001789890.1 hypothetical protein -
  LUZ08_RS04375 rpsB 846142..846909 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  LUZ08_RS04380 - 847108..847200 (-) 93 WP_001790530.1 hypothetical protein -
  LUZ08_RS04385 codY 847251..848024 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LUZ08_RS04390 hslU 848049..849452 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  LUZ08_RS04395 hslV 849518..850063 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  LUZ08_RS04400 xerC 850060..850956 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  LUZ08_RS04405 trmFO 851373..852680 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=550953 LUZ08_RS04385 WP_000055337.1 847251..848024(-) (codY) [Staphylococcus aureus strain E1174_IV_ST22]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=550953 LUZ08_RS04385 WP_000055337.1 847251..848024(-) (codY) [Staphylococcus aureus strain E1174_IV_ST22]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428