Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LUZ03_RS04535 Genome accession   NZ_CP089487
Coordinates   873360..874133 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 0220_II_ST5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 868360..879133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ03_RS04500 - 868613..869383 (-) 771 WP_000473705.1 isoprenyl transferase -
  LUZ03_RS04505 frr 869756..870310 (-) 555 WP_001280006.1 ribosome recycling factor -
  LUZ03_RS04510 pyrH 870329..871051 (-) 723 WP_000057330.1 UMP kinase -
  LUZ03_RS04515 tsf 871188..872069 (-) 882 WP_000201387.1 translation elongation factor Ts -
  LUZ03_RS04520 - 872104..872217 (-) 114 WP_001789890.1 hypothetical protein -
  LUZ03_RS04525 rpsB 872251..873018 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  LUZ03_RS04530 - 873217..873309 (-) 93 WP_001790530.1 hypothetical protein -
  LUZ03_RS04535 codY 873360..874133 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LUZ03_RS04540 hslU 874158..875561 (-) 1404 WP_054170571.1 ATP-dependent protease ATPase subunit HslU -
  LUZ03_RS04545 hslV 875627..876172 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  LUZ03_RS04550 xerC 876169..877065 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  LUZ03_RS04555 trmFO 877482..878789 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=550866 LUZ03_RS04535 WP_000055337.1 873360..874133(-) (codY) [Staphylococcus aureus strain 0220_II_ST5]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=550866 LUZ03_RS04535 WP_000055337.1 873360..874133(-) (codY) [Staphylococcus aureus strain 0220_II_ST5]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428