Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DEIPE_RS04735 Genome accession   NC_019793
Coordinates   991075..991689 (+) Length   204 a.a.
NCBI ID   WP_015234842.1    Uniprot ID   L0A027
Organism   Deinococcus peraridilitoris DSM 19664     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 986075..996689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIPE_RS04700 (Deipe_0957) rplT 986738..987106 (-) 369 WP_015234835.1 50S ribosomal protein L20 -
  DEIPE_RS04705 (Deipe_0958) rpmI 987110..987310 (-) 201 WP_015234836.1 50S ribosomal protein L35 -
  DEIPE_RS04710 (Deipe_0959) infC 987537..988151 (-) 615 WP_041231181.1 translation initiation factor IF-3 -
  DEIPE_RS04715 (Deipe_0960) - 988297..989475 (-) 1179 WP_015234838.1 acyl-CoA dehydrogenase family protein -
  DEIPE_RS04720 (Deipe_0961) - 989648..990325 (+) 678 WP_015234839.1 NUDIX domain-containing protein -
  DEIPE_RS04725 (Deipe_0962) - 990351..990683 (+) 333 WP_015234840.1 hypothetical protein -
  DEIPE_RS04730 (Deipe_0963) - 990744..991043 (+) 300 WP_015234841.1 YbaB/EbfC family nucleoid-associated protein -
  DEIPE_RS04735 (Deipe_0964) recR 991075..991689 (+) 615 WP_015234842.1 recombination mediator RecR Machinery gene
  DEIPE_RS04740 (Deipe_0965) - 991766..992122 (+) 357 WP_015234843.1 roadblock/LC7 domain-containing protein -
  DEIPE_RS04745 (Deipe_0966) - 992119..992460 (+) 342 WP_015234844.1 roadblock/LC7 domain-containing protein -
  DEIPE_RS04750 (Deipe_0967) - 992460..992780 (+) 321 WP_015234845.1 roadblock/LC7 domain-containing protein -
  DEIPE_RS04755 (Deipe_0968) - 992875..994725 (-) 1851 WP_015234846.1 ABC transporter ATP-binding protein -
  DEIPE_RS04760 (Deipe_0969) - 994722..996620 (-) 1899 WP_015234847.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22653.16 Da        Isoelectric Point: 6.1206

>NTDB_id=55083 DEIPE_RS04735 WP_015234842.1 991075..991689(+) (recR) [Deinococcus peraridilitoris DSM 19664]
MKYPASLVALIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLAGALLEAKRELQMCKQCFNVTDRELCDVCTDTGRDRA
QICVVEEPGDVIAIERSGEFRGLYHVLHGAISPMNGVSPEKLYIKPLLTRLQQNELKPEDHEVILATSTTVEGEATSLYL
QRLLEPLGVMVSRIAYGLPVGGALEYADEVTLGRALAGRQRVTR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=55083 DEIPE_RS04735 WP_015234842.1 991075..991689(+) (recR) [Deinococcus peraridilitoris DSM 19664]
ATGAAATACCCGGCCAGCCTGGTGGCCTTGATTCGGGAGCTGTCGCGCTTGCCGGGCATCGGTCCCAAATCAGCGCAGCG
CCTGGCCTTTCACCTGTTCGAACAGCCACGCGAAGACATCGAGCGTCTCGCGGGCGCCTTGCTGGAAGCCAAACGCGAGC
TGCAGATGTGCAAGCAGTGCTTCAACGTGACCGACCGCGAACTGTGCGACGTCTGCACCGACACGGGACGCGATCGCGCG
CAGATCTGTGTGGTCGAGGAGCCCGGTGACGTCATCGCCATCGAACGCAGTGGTGAGTTTCGTGGCCTCTATCACGTCTT
GCACGGCGCGATCAGCCCCATGAACGGCGTTTCTCCCGAGAAGCTCTACATCAAGCCTCTGCTGACCCGACTGCAGCAGA
ACGAACTGAAGCCCGAAGACCACGAGGTCATCCTGGCCACCAGCACCACGGTGGAGGGTGAAGCCACCAGCCTGTACCTG
CAGCGTCTGCTCGAGCCGCTGGGCGTCATGGTGTCACGCATCGCCTACGGTCTGCCCGTGGGGGGCGCCCTGGAATACGC
CGACGAGGTCACCCTGGGGCGCGCCCTGGCTGGCCGGCAGCGGGTGACCCGATAG

Domains

Predicted by InterproScan.

Toprim domain (Toprim_4)

(81-175)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L0A027

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

76.471

100

0.765

Multiple sequence alignment